Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq346 158 3e-33 seq249 120 7e-22 seq4 104 6e-17 >seq346 Length=29424 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || |||||||| || || | ||||||||| | | ||| || || ||| Sbjct 5349 AGGACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGAGAGAGTCCTTCCGTCT 5290 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||||||||| || || ||||| || || ||||| ||||| || Sbjct 5289 TCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTATCC 5230 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| ||||||||||| || | || || || | |||||| ||| Sbjct 5229 TGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCCAGCGTGATGGTC 5170 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || || ||||| || Sbjct 5169 TTTCCAGTTAAAGTCTT 5153 Score = 136 bits (150), Expect = 9e-27 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || ||||| || || |||| || ||||||| || ||| | || || Sbjct 5122 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTCCGGCCGTCC 5063 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || ||||| ||||| ||||||||||| Sbjct 5062 TCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCGGG-GGAATGCCTTCCTTGTCC 5004 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || || ||||| |||| || || || | |||||| ||| Sbjct 5003 TGAATCTTCGCCTTGACATTGTCTATCGTGTCAGAGGACTCAACCTCGAGCGTGATAGTC 4944 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | |||||| Sbjct 4943 TTTCCCGTAAGCGTCTTGACGAA-ATTTGCAT 4913 Score = 102 bits (112), Expect = 2e-16 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| || || ||||| || || || |||||||| ||| | |||||| Sbjct 4504 CCATCTTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCGGGAGGA-TCCCTTCC 4446 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 |||||||||||||| ||| ||| ||||||||||| |||| ||| || || Sbjct 4445 TTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCCGAGGATTCGACCTC 4393 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || ||||| ||||| || |||| ||||| || | | || | ||||| Sbjct 4896 AGAACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 4837 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || || || || ||| ||||| |||| || Sbjct 4836 TCAAGCTGCTTTCCCGCAAAGATGAGACGCTGCTGATCCGGGGGA-TACCT-CCTTATCC 4779 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || || || || | || || || | ||||| ||| Sbjct 4778 TGGATCTTCGCCTTGACGTTGTCAATCGTATCGGACGACTCAACCTCAAGGGTGATGGTC 4719 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||| | || || | ||| | ||||||| Sbjct 4718 TTGCCCGTGAGGGTCTTGACGAAGATTTGCATT 4686 >seq249 Length=58106 Score = 120 bits (132), Expect = 7e-22 Identities = 156/212 (74%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || |||||||| || | |||||| ||| || || |||| || || | |||| ||| Sbjct 56515 ACGAGGTGGAGGGTA-ACTCTTTT-GGATGTTATAGTCGGACAGCGTGCGGCCATTTTCG 56458 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 |||||||| || |||||||| || || || |||||| |||| || ||||||||||||| Sbjct 56457 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGAGCGGGATGTATTCCTTGTCTTGG 56398 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| ||| | | | ||||||||| |||| || || || | ||||| |||||| Sbjct 56397 ATCTTGGCCTTGATATTGTTGATGGTGTCAGAGGACTCAACCTCGAGGGTGAT-GTCTTG 56339 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| | || || | ||| | |||||||| Sbjct 56338 CCCGTGAGGGTCTTGACGAAGATCTGCATTTT 56307 >seq4 Length=583001 Score = 104 bits (114), Expect = 6e-17 Identities = 105/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || |||||||| || |||||||| || || || ||||| || ||| | |||||| Sbjct 25167 CCATCCTCAAGCTGCTTTCC-GCGAAGATCAGACGCTGCTGGTCCGGGGGA-TGCCTTCC 25224 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||||||||| || ||| ||| ||||||||||| |||| || || || | ||| Sbjct 25225 TTGTCTTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTG 25284 Query 225676 ATCGTCTTGCCCGT 225689 || ||||||||||| Sbjct 25285 ATGGTCTTGCCCGT 25298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192524904925928