Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq162 152 7e-32 >seq162 Length=94999 Score = 152 bits (168), Expect = 7e-32 Identities = 343/514 (67%), Gaps = 6/514 (1%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || |||||||| || ||||| || |||||||| || || || ||| Sbjct 12750 TCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGCGGCG 12691 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || ||| ||||| || ||||| ||||| ||||| ||| || | || | | Sbjct 12690 AATGAACCACTGAAGAAGATACCTTCGACGGCGGCAAAAGCGACGAGACGCTGGGCAAAG 12631 Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 ||| |||| || ||||| || ||||| || ||||||||||| | || || Sbjct 12630 GTGGACTCGTCGTCCTCGATCCAGCGGATGGCCCAGTCGGCCTTCTTCTTGATGCACGGG 12571 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || || || ||||| | |||||| || | | ||| || || | || ||||| Sbjct 12570 ATGGTCTCGATAGCGTCGAAGAGATAGGTGCGCTGCTTGGGCTCCTTGATATAGGTATCG 12511 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | ||| || |||| |||||||| || || || |||||||| ||||| || Sbjct 12510 ATCAGGAGAGAGTAGGTTTCCGAGTGAATGTTCTCCATCATGATCTGAAAGCCGTAGAAG 12451 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 || | ||||| | |||||| ||||| | | || || | | | ||||| || || Sbjct 12450 CAGCGGGCTTCGGGGATCTGCACCTCATTGCTGAAGCGCTGGACGAGGTTCTCGTTGACG 12391 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599 || || ||| || || || || || | || || ||||| || |||| | Sbjct 12390 ATACCGTCAGAGGCGGCGAAGAAGGCAAGGACGTGAGAGATAAAGTAGCGCTCGTCGTCG 12331 Query 48600 GTCAG---TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 48656 |||| || |||||||| || ||| || || | ||| | |||||| || ||||| Sbjct 12330 TTCAGCCTGTTGTTCCAGTCGCCGAGATCCTTGGAGAGATCGATTTCTTCGGCGGTCCAG 12271 Query 48657 AATGATGCCTCTGCTTTTTTATACATATTCCATA 48690 || |||||||| || || || ||||| | ||||| Sbjct 12270 AACGATGCCTCGGCCTTCTTGTACATTTGCCATA 12237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665222455680