Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq346 114 3e-20 seq249 104 5e-17 >seq346 Length=29424 Score = 114 bits (126), Expect = 3e-20 Identities = 148/203 (73%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| ||||| || ||||| || |||||||| ||||||| | ||| | || || Sbjct 5122 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTCCGGCCGTCC 5063 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | |||||| || | || || |||||||| || Sbjct 5062 TCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCGGGGGA-ATGCCTTCCTTGTCC 5004 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | |||| |||| || ||| || || || || ||||| Sbjct 5003 TGAATCTTCGCCTTGACATTGTCTATCGTGTCAGAGGACTCAACCTCGAGCGTGATAGTC 4944 Query 152073 TTGCCCGTGAGAGTCTTCACGAA 152095 || ||||| || ||||| ||||| Sbjct 4943 TTTCCCGTAAGCGTCTTGACGAA 4921 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| ||||| || || || || || || |||||||| | | ||| || || ||| Sbjct 5349 AGGACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGAGAGAGTCCTTCCGTCT 5290 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||||||||| | ||||||||||| | ||| || ||||| || Sbjct 5289 TCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTATCC 5230 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | |||| ||| ||| || || || || || || Sbjct 5229 TGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCCAGCGTGATGGTC 5170 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||||||| || | |||||| Sbjct 5169 TTTCCAGTTAAAGTCTTCAC-AAAATCTGCAT 5139 Score = 100 bits (110), Expect = 7e-16 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || ||||| |||||||| || || ||||||||||| || | | || | Sbjct 4903 GAGGCGGAGAACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCG 4844 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| || || ||||| || | |||||| |||| | ||| || Sbjct 4843 GCCATCCTCAAGCTGCTTT--CCCGCAAAGATGAGACGCTGCTGATCCG-GGGGATACC- 4788 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||| | || | | || || ||| || ||||| Sbjct 4787 TCCTTATCCTGGATCTTCGCCTTGACGTTGTCAATCGTATCGGACGACTCAACCTCAAGG 4728 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || ||||||||||| ||||| ||||||| |||||| Sbjct 4727 GTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCATT 4686 >seq249 Length=58106 Score = 104 bits (114), Expect = 5e-17 Identities = 155/214 (72%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || || || || ||| |||||||| ||||||| || |||| | || | |||| ||| Sbjct 56515 ACGAGGTGGAGGGTA-ACTCTTTT-GGATGTTATAGTCGGACAGCGTGCGGCCATTTTCG 56458 Query 151956 AG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 || ||||| ||||||||||| || | ||||||||| || ||| |||||| |||| Sbjct 56457 AGCTGCTTT--CCGGCGAAGATCAGACGCTGCTGGTCGAGCGGGATGTATTCCTTGTCTT 56400 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 | || || |||| | | | | | |||| || ||| || || || || || || | Sbjct 56399 GGATCTTGGCCTTGATATTGTTGATGGTGTCAGAGGACTCAACCTCGAGGGTGAT-GTCT 56341 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||||||||| ||||| ||||||| ||||||||| Sbjct 56340 TGCCCGTGAGGGTCTTGACGAAGATCTGCATTTT 56307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153814709268452