Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq346 149 1e-30 seq249 138 2e-27 seq4 96.9 7e-15 >seq346 Length=29424 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | || ||| || |||||||||||||| | Sbjct 4912 ACCACCACGGAGGCGGAGAACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGA 4853 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | ||| || || || | || Sbjct 4852 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCCGCAAAGATGAGACGCTGCTGATC-CGGGG 4794 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||| || |||||||| || || ||| | || || || || || | || || Sbjct 4793 GATA-CCTCCTTATCCTGGATCTTCGCCTTGACGTTGTCAATCGTATCGGACGACTCAAC 4735 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| ||||| ||||| | ||||| ||||| || |||||| Sbjct 4734 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCATT 4686 Score = 127 bits (140), Expect = 4e-24 Identities = 165/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| || || || | ||| ||| || || || ||||| |||| Sbjct 5364 CCACCACGCAGACGAAGGACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGAG 5305 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | || || || || || || || || ||||| | || || ||||| || Sbjct 5304 AGAGTCCTTCCGTCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCCGGGGGG 5245 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || ||||| || || || | ||||| ||||| |||| || || Sbjct 5244 ATACCCTCCTTATCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACC 5185 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || |||||||| || || |||||||| Sbjct 5184 TCCAGCGTGATGGTCTTTCCAGTTAAAGTCTTCAC-AAAATCTGCAT 5139 Score = 107 bits (118), Expect = 4e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998 |||||||| || || || || ||||||||||||| ||| || ||||| ||| | || Sbjct 4507 CGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCGGGAGGA-TCCCT 4449 Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058 ||||||||||||||||| || || || ||||||| |||||||| | |||||| || ||| Sbjct 4448 TCCTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCCGAGGATTCGACCTCAAGA 4389 Query 283059 GTGATC 283064 ||| || Sbjct 4388 GTGGTC 4383 >seq249 Length=58106 Score = 138 bits (152), Expect = 2e-27 Identities = 146/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||| ||||| | ||||||||||||| || || || || ||||| |||||| Sbjct 56496 TTTTGGATGTTATAGTCGGACAGCGTGCGGCCATTTTCGAGCTGCTTTCCGGCGAAGATC 56437 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||| || ||||| ||| || ||||||||||||||||| || || | | | | Sbjct 56436 AGACGCTGCTGGTCGAGCGGGATGTATTCCTTGTCTTGGATCTTGGCCTTGATATTGTTG 56377 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || ||||| || | || || ||||| ||||| ||||| ||||| | ||||| ||||| Sbjct 56376 ATGGTGTCAGAGGACTCAACCTCGAGGGTGAT-GTCTTGCCCGTGAGGGTCTTGACGAAG 56318 Query 283092 ATCTGCATTTT 283102 ||||||||||| Sbjct 56317 ATCTGCATTTT 56307 Score = 98.7 bits (108), Expect = 2e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTT-GTAGTCAGC 282931 ||||| || |||| || || || || | ||| || || |||||||| |||||| Sbjct 56743 CCACCGCGGAGGCAGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTTGTAGTCGAA 56684 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||||||||| || || || || ||||| ||||||| ||| | | ||| ||| Sbjct 56683 CAGCGTGCGGCCATCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTACTAGTCGGGCGG 56624 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||| | | | ||||| || || | | ||||||||||| |||| || || Sbjct 56623 GATGCCTTCCTCGCCCTAAATCTTAGCCTTGATACTGTCGATAGTGTCGGAAGACTCAAC 56564 Query 283052 TTCGAGAGTGATCG-TCTTACCCGTCAAAGTCTTAACG 283088 |||| ||||| | | |||| ||| | ||||| ||| Sbjct 56563 CTCGACGGTGATGGTTTTTACTCGTGAGGGTCTTGACG 56526 >seq4 Length=583001 Score = 96.9 bits (106), Expect = 7e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || ||| | ||||||| ||| || ||||| | || || || ||| Sbjct 25167 CCATCCTCAAGCTGCTTTCCG-CGAAGATCAGACGCTGCTGGTC-CGGGGGATGCCTTCC 25224 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||||||||| || || || || | ||||| ||||| || | ||||| ||||| ||| Sbjct 25225 TTGTCTTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTG 25284 Query 283062 ATCGTCTTACCCGTCAAAGTCT 283083 || ||||| ||||| | |||| Sbjct 25285 ATGGTCTTGCCCGTGAGGGTCT 25306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046733674525448