Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq346 131 2e-25 seq249 89.7 5e-13 >seq346 Length=29424 Score = 131 bits (144), Expect = 2e-25 Identities = 169/228 (74%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || || || || ||| ||||||||| |||||||| ||||| Sbjct 5137 CCGCCACGGAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGAC 5078 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| |||||||| || || ||||| || | || |||| Sbjct 5077 AGAGTCCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGAT-CGGGGGA 5019 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| | || || | || | | | ||||| ||||| || Sbjct 5018 ATGCCTTCCTTGTCC-TGAATCTTCGCCTTGACATTGTCTATCGTGTCAGAGGACTCAAC 4960 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || || || ||||| |||||||| ||| |||| ||||| Sbjct 4959 CTCGAGCGTGATAGTCTTTCCCGTAAGCGTCTTGACG-AAATTTGCAT 4913 Score = 113 bits (124), Expect = 4e-20 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||||| || || || ||| Sbjct 5364 CCACCACGCAGACGAAGGACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGAG 5305 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || |||||||| || ||||| || |||||||| ||||||| ||| Sbjct 5304 AGAGTCCTTCCGTCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCCGGGGGG 5245 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || || | || | | | |||||| ||||| || Sbjct 5244 ATACCCTCCTTATCC-TGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAAC 5186 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||| || || || || || | ||||| || ||||||||||| Sbjct 5185 CTCCAGCGTGATGGTCTTTCCAGTTAAAGTCTTCAC-AAAATCTGCAT 5139 Score = 107 bits (118), Expect = 2e-18 Identities = 164/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || |||||||| || |||||||| ||||| ||||| ||| Sbjct 4911 CCACCACGGAGGCGGAGAACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAG 4852 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || || || || || ||||| || |||| |||| Sbjct 4851 AGGGTGCGGCCATCCTCAAGCTGCTTTCCCGCAAAGATGAGACGCTGCTGATCCGGGGGA 4792 Query 41756 -ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || |||||| ||| || | || || | ||| | | | || ||| |||||| | Sbjct 4791 TAC---CTCCTTATCC-TGGATCTTCGCCTTGACGTTGTCAATCGTATCGGACGACTCAA 4736 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || ||||| || ||||| ||||| || ||||| Sbjct 4735 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 4687 >seq249 Length=58106 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTA-TAGTCGG 41693 ||| ||||| || | | || || || || ||| ||||||||| ||||| |||||| Sbjct 56744 GCCACCGCGGAGGCAGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTTGTAGTCGA 56685 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | || ||||| | || ||||||||||| |||||||| ||||| |||| | ||| | | Sbjct 56684 ACAGCGTGCGGCCATCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTACTAGTCGGGCG 56625 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCA-AC-GACGACACAGTGTCGCTCGACTC 41811 | | || |||| | || || || ||| | || | || | ||||||| ||||| Sbjct 56624 GGATGCCTTCCTCGCCCTAAATCTTAGCCTTGATACTGTCG--ATAGTGTCGGAAGACTC 56567 Query 41812 CACCTCCACCGTTATCG-TTTTACCCGTCAGCGTCTTTACG 41851 ||||| || || || | |||||| ||| || ||||| ||| Sbjct 56566 AACCTCGACGGTGATGGTTTTTACTCGTGAGGGTCTTGACG 56526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301619134400