Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20EF0021_20[genbank_20GCA_5F000292665.1_202012-08-21] 2,051 sequences; 44,372,120 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq438 91.5 1e-13 seq1523 84.2 2e-11 >seq438 Length=237658 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | |||||||||||| || ||||| || |||| Sbjct 145523 CCACCGCGGAGACGGAGGACGAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAA 145582 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||| ||||| || || || | || | | ||| || || ||| Sbjct 145583 AGGGTGCGACCGTCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGA 145642 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | ||| |||||| || ||| Sbjct 145643 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCAACC 145702 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||| |||||||||||||| Sbjct 145703 TCGAGGGTGATGGTCTTGCCGGT 145725 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | ||| |||||||| || ||||| ||||| | Sbjct 144786 CCACCACGAAGACGGAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 144845 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||||| ||| || || || | || | |||||||||||| || Sbjct 144846 AATGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGGG 144905 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| || || | | | | || || | |||| Sbjct 144906 ATACCCTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATGGTGTCCGACGACTCCACC 144965 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || |||||||| || || || |||||||| |||||||| Sbjct 144966 TCCAATGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 145012 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | |||||||||||||||||||| ||||| | Sbjct 145242 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAG 145301 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | || || || || || || || | ||||| | || || || || Sbjct 145302 AGGGTTCGGCCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 145361 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||| || || | | ||| ||||| || ||| | Sbjct 145362 ATACCTTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCGATCGTATCGGAGGACTCGACT 145421 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 || | || |||||||||||||| | || ||||| Sbjct 145422 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 145456 >seq1523 Length=724860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | || || | ||| | ||||||||||||||| ||||| || || | Sbjct 230160 TCCTCCACGAAGACGAAGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGA 230101 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| || |||| || || || ||||| || | || || | ||||||||| || Sbjct 230100 GAGGGTTCGGCCGTCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCCGGTGG 230041 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || |||||||| |||||| || || | | ||| |||||| | |||| Sbjct 230040 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGACGACTCCAC 229981 Query 21128 TTCCACGGTAATGGTCTTGCCGGT 21151 || | ||| || |||||||| || Sbjct 229980 CTCGAGGGTGATAGTCTTGCCCGT 229957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422248644971516