Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20EF0021_20[genbank_20GCA_5F000292665.1_202012-08-21] 2,051 sequences; 44,372,120 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq438 107 2e-18 seq1523 84.2 2e-11 >seq438 Length=237658 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || || || ||||| ||||| || || ||||| | || | ||| || Sbjct 144803 CACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAATGTACGACCATCCTC 144862 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || || ||| | ||||||| |||||||| || || || || || |||||||| Sbjct 144863 CAACTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGGGATACCCTCCTTATCTTG 144922 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| ||| |||| || | || | |||||| || ||||| || || | || | || | Sbjct 144923 AATCTTTGACTTGA-CGTTGTCAATGGTGTCCGACGACTCCACCTCCAATGTGATTGTCT 144981 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || | ||| || ||||| |||||||| Sbjct 144982 TGCCAGTCAAAGTCTTGACAAAGATTTGCAT 145012 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || |||||||| || || || ||| || |||| ||| || | ||| Sbjct 145266 TGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCTTCAAGTTGC 145325 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | ||||| || || || ||||| ||||| || |||||||| || Sbjct 145326 TTTCCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTG 145385 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | || ||||| ||||||||||||||||| | || |||||||| Sbjct 145386 CTCTTGA-CGTTGTCGATCGTATCGGAGGACTCGACTTCGAGAGTGATGGTCTTGCCGGT 145444 Query 45317 TAGAGTTTTTAC 45328 || || || || Sbjct 145445 GAGGGTCTTGAC 145456 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAAT 45194 ||| ||||| |||||||||||||| || || ||| ||| | | | || || | | Sbjct 145037 ATGAAGCGTAGATTCCTTTTGGATGTTGTAGTCG--GACAGAGTGCGGCCGTCTTCGAGT 145094 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | || || ||||| || || || ||||| || |||||||| Sbjct 145095 TGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGAATC 145154 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 ||| |||| || | || | ||| ||||| || ||||||||||| || | || || || Sbjct 145155 TTTGACTTGA-CGTTATCGATGGTATCGGACGATTCGACTTCGAGGGTGATAGTCTTTCC 145213 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || || || |||||||| Sbjct 145214 GGTCAGGGTCTTGACGAAGATTTGCAT 145240 >seq1523 Length=724860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || || | | || ||||| || || || ||||||||||| || |||||| Sbjct 230160 TCCTCCACGAAGACGAAGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGA 230101 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || |||| || || | ||| || || ||| | |||| |||||||||||||| || Sbjct 230100 GAGGGTTCGGCCGTCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCCGGTGG 230041 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || || |||| || | ||| || || ||||| || Sbjct 230040 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGACGACTCCAC 229981 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||||| || | || ||||| || || || || || Sbjct 229980 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCAC 229945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451991611767960