Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20EF0021_20[genbank_20GCA_5F000292665.1_202012-08-21] 2,051 sequences; 44,372,120 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1523 100 2e-16 seq438 93.3 3e-14 seq491 87.8 1e-12 >seq1523 Length=724860 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||| |||||| ||||||||| ||||| ||||| || Sbjct 230159 CCTCCACGAAGACGAAGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAG 230100 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||| ||||| || || || || || | || || |||||||| || Sbjct 230099 AGGGTTCGGCCGTCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCCGGTGGG 230040 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| |||||| Sbjct 230039 ATTCCCTCCTTGTCCTGGATCTT 230017 >seq438 Length=237658 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| || || |||||||| ||||| || || || Sbjct 145014 CCACCACGAAGACGAAGAACCAAATGAAGCGTAGATTCCTTTTGGATGTTGTAGTCGGAC 145073 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| ||||| || ||||| || || | ||||||||||| || || Sbjct 145074 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCTGGTGGG 145133 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTC-TTCGCTCTCCA 34657 | || ||||||||| ||| |||| || ||| || || || || || | || | Sbjct 145134 ATACCTTCCTTGTCT-TGAATCTTTGACTTGACGTTATCGATGGTATCGGACGAT-TCGA 145191 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || || || ||||| | || || || || || ||||| Sbjct 145192 CTTCGAGGGTGATAGTCTTTCCGGTCAGGGTCTTGACGAAGATTTGCAT 145240 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| ||| ||||||||||||||| || || || || ||||| Sbjct 145251 AGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTTCGG 145310 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || || || || | ||| ||||| || || || | || ||| Sbjct 145311 CCATCTTCAAGTTGCTTTCCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATACCTTCC 145370 Query 34609 TTGTCTGTGATCTT 34622 |||||| ||||| Sbjct 145371 TTGTCTTGAATCTT 145384 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| |||||| |||||| || ||||| ||||| ||||| || || Sbjct 145532 AGACGGAGGACGAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGA 145591 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || ||||||||||| || || || | || ||| Sbjct 145592 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCC 145651 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 145652 TTGTCCTGGATCTT 145665 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||||||||||||||| |||||| || ||||| || || Sbjct 144785 GCCACCACGAAGACGGAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 144844 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | || || | || ||||| || || || || | ||| ||||| || || Sbjct 144845 CAATGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGG 144904 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||| ||| ||| |||| || ||| | ||| ||||| ||||| Sbjct 144905 GATACCCTCCTTATCT-TGAATCTTTGACTTGACGTTGTCAATGGTGTCCGACGACTCCA 144963 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || || || || || || || || ||||| || ||||| Sbjct 144964 CCTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 145012 >seq491 Length=357818 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 |||| || ||||| || |||||||| || || |||| || ||||| || || ||||| | Sbjct 80210 CCTTCTGGATGTTGTAGTCTGAAAGGGTACGGCCGTCCTCGAGTTGCTTTCCAGCAAAGA 80269 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 | || ||||| |||||||| || | |||||||||||| |||||| Sbjct 80270 TCAATCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTT 80315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721732841883