Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20No.11243_20[genbank_20GCA_5F000836255.1_202015-02-02] 20 sequences; 21,719,822 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11 156 5e-33 seq20 120 4e-22 >seq11 Length=1047007 Score = 156 bits (172), Expect = 5e-33 Identities = 330/487 (68%), Gaps = 4/487 (1%) Strand=Plus/Plus Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 |||||||||||||||||||| | || | | | | | || | |||||||||||||| Sbjct 148312 GATGCCAGATTACAAACGGCGATTTCGTCCGGAGCAGTGTACTCGATTATCTCAGTGCAG 148371 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 ||||| | || ||| || | || | ||| || || || |||||| |||||| Sbjct 148372 AGATTCGAGCTCTGGATGACGCCAAGGTTCTTTTGGTTGCTTTTGCGGTTACAGGCATCC 148431 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 || || || ||| | ||||| ||||| |||| || | || | ||| || ||| | | Sbjct 148432 TTGTAGAGCATGTACGGAGTGCCAGTCTCAACTTGGGCGTCCAGAATTGCACGCCATAGG 148491 Query 63078 ACTCGAGCCTTTATTATAGATTTGTAT-CTCCTTTCTCTTTCGTATAGTGTATACAATCG 63136 | |||| || | | || | |||||| | || ||| || |||| || Sbjct 148492 ATGTGAGCGGGAATGGTCC-TGCGTCCACGCCTTTCCTTCTCATATCGTTCGTACAG-CG 148549 Query 63137 T-TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 63195 | || || || | ||| |||||| || || || ||||| ||||| |||||||||| Sbjct 148550 TCTCAAAATCTTGTCCGTAAACATCAGGCAGCCCCGGGCATTCGTCCGGGCACATCAACG 148609 Query 63196 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63255 ||| ||| ||| | || || || ||||| || || | ||| ||||| || || ||| Sbjct 148610 TCCAATCTTCGTTTTGCTCAACGCGCTTCATGAACAGGTTAGGGATCCAGAGTGCATTAA 148669 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 | ||||| | || | || ||| || || || |||||| ||| || ||||| || | Sbjct 148670 AAAGATCGCGGGCACGATTTTCTTCTTTGCCGTGATTCTTGCGAAGGTCTAGGAAAGCAA 148729 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 | ||| | ||||| || |||||||||| ||| | ||||||| ||||||||||| | Sbjct 148730 ACACATCCGCGTGCCAGGGCTCCAAGTATACGGCAAATGCTCCAGGGCGTTTGTTTCCCC 148789 Query 63376 CCTGATC 63382 | ||||| Sbjct 148790 CTTGATC 148796 Score = 82.4 bits (90), Expect = 1e-10 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| ||| || || || || ||||| |||||||| | || || |||||||| Sbjct 556579 AACAGCAAGCAGGCAAAGTCAGTGTGCATGCCCTCGTCACGCGAGATGAGCTCGTTGGAG 556638 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || ||||| || | ||| ||||||||||| || ||||| || || | || || || || Sbjct 556639 AAAGTGAGACCAGCCATGAGGCCACGCTTCTTGAGCCAGAAGATTGCTGCAAAGGAGCCG 556698 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAAT 33449 |||||||| || ||||| || || || ||||| Sbjct 556699 CTGAAGAAGATACCCTCTACGGCGGCGAATGCAAT 556733 >seq20 Length=2175025 Score = 120 bits (132), Expect = 4e-22 Identities = 570/900 (63%), Gaps = 12/900 (1%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 |||||||||||| || |||||| | | | ||||| || || | || ||||||| || Sbjct 1765521 TTCGAACTCGTCACCATAAACATCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGCGT 1765580 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| |||| | || || || ||||| || | || || ||||| || || || Sbjct 1765581 CCAGGTGCCGTTCTGCTCGACACGCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAA 1765640 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 ||||| | | | ||||| || || ||||| | || |||||||||| | Sbjct 1765641 CAGATCACGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACGAGAA 1765700 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | ||| | ||||||||| |||| ||| ||||| | | |||| || || ||||| || || Sbjct 1765701 CACATCCGCATGCCACGGCTCCACGTAGATGGCGAAAGCTCCGGGACGCTTGTTGCCACC 1765760 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 || || | || | || ||||| || | || | | ||| || | || ||| ||||| Sbjct 1765761 TTGGTCAACATAGCGGGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAAGACCATTTGA 1765820 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 | | || || || || ||| || || | ||||| ||| || ||||| Sbjct 1765821 TGTGCCGTTAGTGCCTCCGATGTACGAACCGGTAGCACGGATACGGTGAACGTTCAGACC 1765880 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 || || || || | || ||||| | ||||| || | |||||||| || || || Sbjct 1765881 GATGCCACCAGCGTTCTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCATAAATGCCATC 1765940 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT---AGT 63613 ||||| || || |||||| | || | ||| ||| | ||| | | || Sbjct 1765941 GATGCTGTCCTCCTTCATGTCGATGAGGA---AGCAAGAGGCGAGCTGAGGGTTCGGCGT 1765997 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA-TTTTTCAGAAAGTAGATTGT 63672 || || | || | ||||| || |||||||| || | || ||| | |||| |||| Sbjct 1765998 ACCAGCGCTGAAGAGCGTAGGGGAGGCGTGCGTGAAGTACTTGTTCGACATGTAG-TTGT 1766056 Query 63673 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 | |||||||| || | || || ||| || || || || ||||||||||| | || Sbjct 1766057 ATGTCTCAATGGCGGCTTCGATGTCCTCGCCGTGGATACCGACAGCGACACGCATGATCA 1766116 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 | || || || | ||| | | |||| | || | | || ||||| || | | Sbjct 1766117 TCTGTTGTGGCCGTTCGGCCACCTTGCCATCAATCCTGAGCAGATAGGAACGCTCGAGGG 1766176 Query 63793 TTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 | || || || || || | ||| ||||| || || ||||| | || |||||||||| Sbjct 1766177 TCTTGAACCCGAAGTATTGGTAGTTGAAA--TCACGGTCGTAGACGATGGCCGAGTTGAG 1766234 Query 63851 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTT 63910 | || ||| || | || |||| || |||||| || || | || Sbjct 1766235 CTCTTCGCTATGCTTCATGACAGTATCGTACGTCTCTTGTGAAATCATGGGGGCGGCCTT 1766294 Query 63911 CCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 63970 ||| || || || ||||| | ||| | ||| || || || ||| | || || Sbjct 1766295 ATTATTCTTGGGGTTGACATAATAGAAAAGATCTGAAATGACGGCAGAGAATTGCTTCTT 1766354 Query 63971 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 || | |||||| || || || || ||||| | || || || ||||| || || ||||| Sbjct 1766355 GGTCTGCTTGTGGAGGTTGGAGACTGCTATACGAGCCGCGAGGATGGCGTAGTCTGGATG 1766414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947044263200