Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20No.11243_20[genbank_20GCA_5F000836255.1_202015-02-02] 20 sequences; 21,719,822 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq16 125 2e-23 seq18 116 9e-21 seq11 104 6e-17 seq15 87.8 4e-12 >seq16 Length=1709166 Score = 125 bits (138), Expect = 2e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||| | ||| ||| |||||||| || ||||| | | Sbjct 1053776 CCACCACGCAGACGGAGAACAAGATGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAG 1053717 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || ||||| || |||||||| ||||| || | || Sbjct 1053716 AGAGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGA 1053657 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || ||||| || || ||| || ||||| || || | ||| ||||| || Sbjct 1053656 ATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTGTCGGAAGATTCAAC 1053598 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 1053597 CTCAAGGGTGATGGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCAT 1053550 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || | |||||| || |||||||| || || || || |||||| Sbjct 1053968 TCCTTCTGGATATTGTAATCCGAGAGCGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAG 1053909 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || | ||||| || || ||||| || || |||| || ||||| Sbjct 1053908 ATGAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCTTGAATCTTCGACTTGACGTTG 1053849 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| ||||| | || || || || ||||| || ||||||||| Sbjct 1053848 TCGATTGTGTCTGATGATTCCACTTCCAAAGTTATGGTTTTGCCGGTGAGTGTCTTGACG 1053789 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1053788 AAGATCTGCAT 1053778 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | |||| || || || || || ||||||| Sbjct 1053548 CCACCACGCAGACGCAGCACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAC 1053489 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||| ||||| || |||||||||||||| || | || Sbjct 1053488 AGGGTGCGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 1053429 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || ||||| || || ||| || || || || || | ||| || || || Sbjct 1053428 ATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATGGTGTCGGAAGACTCAAC 1053370 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCA 288451 || || ||||| ||||| || |||| Sbjct 1053369 CTCAAGGGTGATGGTCTTTCCCGTCA 1053344 >seq18 Length=1930349 Score = 116 bits (128), Expect = 9e-21 Identities = 156/212 (74%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 288272 GAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTT 288331 |||| |||| | || ||||| || |||||| || || || || || || | || | Sbjct 1554255 GAATGTTGCTGACCTTCTGGATGTTGTAGTCGCTCAGAGTCCGGCCATCCTCAAGCTGCT 1554196 Query 288332 TTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCG 288391 |||| || ||||||||||||||||| | || || || || || |||||||| || | Sbjct 1554195 TTCCGGCAAAGATCAGACGCTGTTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTT-G 1554137 Query 288392 CT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || | |||||||| || || ||||| ||||| ||||| || || Sbjct 1554136 CTCTTGACGTTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTG 1554077 Query 288451 AGAGTCTTGACGAATATCTGCATTATGTTATT 288482 || |||||||||| | |||||| || ||||| Sbjct 1554076 AGGGTCTTGACGA--AGCTGCATCAT-TTATT 1554048 >seq11 Length=1047007 Score = 104 bits (114), Expect = 6e-17 Identities = 173/245 (71%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTA-TGATCGG 269156 ||||| || || | || |||||||| | |||||| |||| ||| | || | || Sbjct 556526 GAAGCCGTCACGATTGAGCAAGAGTTCCTGACGGACGCTCTCCC-TGTAGCACTGCTTGG 556468 Query 269157 TATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGC 269216 ||||| | ||||||||| || || || || ||||||||||| ||| || || ||| Sbjct 556467 CATGAACTCGAATCTCATGAGACAGTACATTGAGTTCGTGGCTGACCGTCTCCTCCTGGC 556408 Query 269217 ACTCGGTTATGAGAAAGTG-TACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTT 269275 |||||| || | || || ||||| | ||||| |||| ||||||||| || | Sbjct 556407 ACTCGGCAATCA-AAGGTACTACAACGTTAGCAATCCGTTCGACTTTATGGAGAACATCT 556349 Query 269276 CGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTG 269335 |||| ||| ||||||||||||||||| ||||| || | ||||| || |||||| Sbjct 556348 CGCTATCAGGCAAGACGAACTTCTTCGAGAAGCGCGTGGGTGACTACCAGAAGGCTGGTG 556289 Query 269336 TAATG 269340 | ||| Sbjct 556288 TCATG 556284 >seq15 Length=1704560 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 288380 CCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCG 288439 ||||||| || | || || || || || | |||||||| || |||||||| ||||||| Sbjct 828749 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCGACTTCGAGGGTGATCG 828808 Query 288440 TCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 |||| || || || ||||||||||| |||||||| ||| Sbjct 828809 TCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATGATG 828846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654097713560