Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20No.11243_20[genbank_20GCA_5F000836255.1_202015-02-02] 20 sequences; 21,719,822 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq16 141 1e-28 seq18 120 3e-22 seq15 107 2e-18 >seq16 Length=1709166 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || ||||||||||| |||||||| || ||||| || |||| ||| Sbjct 1053758 ACAAGATGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCGTCTTCG 1053699 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || |||| |||||||||||| | || | || |||||||||| Sbjct 1053698 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 1053639 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||||| ||| | | | |||||| ||||| || || | |||||||| || Sbjct 1053638 ATCTTGCTCTTGA-CGTTGTCGATGGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTT 1053580 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| || || ||||| ||||| Sbjct 1053579 TCCAGTGAGCGTCTTGACGAAGATCTGCAT 1053550 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| ||||| || |||||| ||||||||||| || || || || || | Sbjct 1053993 ACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAATCCGAGAGCGTTCGGCC 1053934 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | ||||||||| ||||| || | |||||||||||| | || | || |||||| Sbjct 1053933 GTCTTCCAACTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTT 1053874 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 || |||||| ||||| ||| | | | ||||| |||||||| |||| || | Sbjct 1053873 ATCTTGAATCTTCGACTTGA-CGTTGTCGATTGTGTCTGATGATTCCACTTCCAAAGTTA 1053815 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||||| || || || || || ||||| ||||| Sbjct 1053814 TGGTTTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 1053778 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||| ||||| | || |||||| || || ||||||||||| || ||||| | Sbjct 1053537 ACGCAGCACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGACC 1053478 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || ||||| || || || |||| ||||||||||| | || | || |||||| Sbjct 1053477 ATCCTCAAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTT 1053418 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||| |||||| | | | |||||| || || || || | ||||| Sbjct 1053417 GTCCTGAATCTTGCTCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCAAGGGTGAT 1053358 Query 46558 GGTTTTGCCCGTCA 46571 ||| || ||||||| Sbjct 1053357 GGTCTTTCCCGTCA 1053344 >seq18 Length=1930349 Score = 120 bits (132), Expect = 3e-22 Identities = 138/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||| ||||| || | || || |||||||| ||||| || | Sbjct 1554243 CCTTCTGGATGTTGTAGTCGCTCAGAGTCCGGCCATCCTCAAGCTGCTTTCCGGCAAAGA 1554184 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||| ||||| | || | || |||||||||| |||||| |||||| ||| | Sbjct 1554183 TCAGACGCTGTTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGTTG 1554125 Query 46524 CC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||||||||| ||||| || | ||||| || |||||||| || || || || Sbjct 1554124 TCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 1554065 Query 46583 AAG 46585 ||| Sbjct 1554064 AAG 1554062 >seq15 Length=1704560 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || ||||||||||| ||||| Sbjct 828592 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCGAA 828651 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||| |||||||||||||| || | || ||||||||| Sbjct 828652 GATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 828690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238258690400