Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20No.11243_20[genbank_20GCA_5F000836255.1_202015-02-02] 20 sequences; 21,719,822 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq16 100 2e-16 seq18 82.4 5e-11 >seq16 Length=1709166 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || ||||| ||||| || || |||| | || || ||||| ||||| ||||| Sbjct 1053741 TTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAA 1053682 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||||||||| |||||| |||||| Sbjct 1053681 GATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTT 1053622 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||||| || | ||| ||||| ||||| ||||| ||||| || Sbjct 1053621 GTCGATGGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTTCCAGTGAGCGTCTTGAC 1053562 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 1053561 GAAGATCTGCATA 1053549 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| || || || ||||| || |||| | || ||| Sbjct 1053986 ACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAATCCGAGAGCGTTCGGCCGTCTTCC 1053927 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || || || || || || |||||||| | || | |||||||| || | Sbjct 1053926 AACTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCTTGA 1053867 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | || | || || || | ||||||||||| Sbjct 1053866 ATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCCACTTCCAAAGTTATGGTTTTG 1053807 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||| || |||||||||||| Sbjct 1053806 CCGGTGAGTGTCTTGACGAAGATCTGCATA 1053777 Score = 82.4 bits (90), Expect = 5e-11 Identities = 122/171 (71%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || ||| | || |||| || || || ||||| ||||| Sbjct 1053512 TCCTTCTGAATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGTTGCTTTCCAGCAAAG 1053453 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| ||||| || Sbjct 1053452 ATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGAC--AT 1053395 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | ||||| || | |||||| || | ||| ||||| |||||||| Sbjct 1053394 --TGTCGATGGTGTCGGAAGACTCAACCTCAAGGGTGATGGTCTTTCCCGT 1053346 >seq18 Length=1930349 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/202 (69%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 34780 GAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTT 34839 |||| |||| | ||||| ||||| ||||| || | || |||| || ||||| | Sbjct 1554255 GAATGTTGCTGACCTTCTGGATGTTGTAGTCGCTCAGAGTCCGGCCATCCTCAAGCTGCT 1554196 Query 34840 TTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCT 34899 |||||||||| || || || || ||||| | || | ||||||||||| ||||| Sbjct 1554195 TTCCGGCAAAGATCAGACGCTGTTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGC 1554136 Query 34900 GTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959 |||||| | || | || | | ||| || |||| ||| || || || ||||||| Sbjct 1554135 TCTTGACGTTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGA 1554076 Query 34960 GAGTCTTCACAAAGATCTGCAT 34981 | ||||| || ||| |||||| Sbjct 1554075 GGGTCTTGACGAAG--CTGCAT 1554056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633520870560