Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20No.11243_20[genbank_20GCA_5F000836255.1_202015-02-02] 20 sequences; 21,719,822 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq16 176 1e-38 seq18 136 9e-27 seq15 107 4e-18 seq20 84.2 5e-11 >seq16 Length=1709166 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || | |||||| || ||||||||||| || || | || || | || ||| Sbjct 1053761 AGAACAAGATGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCGGCCGTCT 1053702 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| ||||| || ||||||||||||| || ||||||||| Sbjct 1053701 TCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 1053642 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||||||||| || ||||||||| || ||||| ||| Sbjct 1053641 TGAATCTTGCTCTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCAAGGGTGATGGTC 1053582 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | |||||| Sbjct 1053581 TTTCCAGTGAGCGTCTTGACGAAGATCTGCAT 1053550 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | || ||||| || ||||| || ||||||| || || Sbjct 1053999 ACGAAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAATCCGAGAGCGT 1053940 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||||| ||||||||| |||||||| ||||| || ||||||||||| | || Sbjct 1053939 TCGGCCGTCTTCCAACTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATGCC 1053880 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || || ||||| || ||||| ||||| ||||| || ||| || || | Sbjct 1053879 CTCCTTATCTTGAATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCCACTTCCAA 1053820 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || ||||| ||||| || || | |||||| Sbjct 1053819 AGTTATGGTTTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 1053778 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || || ||||| || || | ||||| | ||||| Sbjct 1053533 AGCACGAGATGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGACCATCC 1053474 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || ||||| || || || ||||||||||||| || ||||||||| Sbjct 1053473 TCAAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 1053414 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| || |||||||| || ||||| ||| Sbjct 1053413 TGAATCTTGCTCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCAAGGGTGATGGTC 1053354 Query 211083 TTTCCCGT 211090 |||||||| Sbjct 1053353 TTTCCCGT 1053346 >seq18 Length=1930349 Score = 136 bits (150), Expect = 9e-27 Identities = 151/198 (76%), Gaps = 10/198 (5%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || || |||| ||||| || |||||||| || || ||||| Sbjct 1554241 TTCTGGATGTTGTAGTCGCTCAGAGTCCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATC 1554182 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || ||||||||||| |||| || ||||||||||||||||| || ||||| ||| Sbjct 1554181 AGACGCTGTTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCG 1554122 Query 211047 ATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 |||||||| ||| || |||||||| ||||| ||||| |||||||| ||||| || Sbjct 1554121 ATGGTGTC---GCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 1554065 Query 211104 AACACCTGCAT--TTTAT 211119 | | |||||| ||||| Sbjct 1554064 A--AGCTGCATCATTTAT 1554049 >seq15 Length=1704560 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || ||||| || |||||||| || || | ||||| | || ||| Sbjct 828572 AGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 828631 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||||||||||| |||||||| ||||| || ||||| || |||| || |||||||| Sbjct 828632 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 828690 >seq20 Length=2175025 Score = 84.2 bits (92), Expect = 5e-11 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||| ||||||||||| | ||||| ||||| ||||| |||||||| | || Sbjct 1765368 GTTCTTCTGGTTGCTCTTGCGATTGCAA---GCATCCTTGTAGAGCATGAAGGGGTTACC 1765424 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||| | |||||| |||| ||| || ||| |||| ||| || |||| || | Sbjct 1765425 GGTCTCGGTCTGAGCCTCGAGGATGGCATACCACAGCTTCTGAGCACGGATGGTGTCACG 1765484 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | ||||| |||||||| | ||||| || ||||| || ||||| ||||| Sbjct 1765485 ACCGCGACCTTCCTTCTCGTAGCGCTCATAGAGTTCTTCGAACTCGTCACCATAAACATC 1765544 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 | ||||| || ||| |||||||| | || |||| |||| | || || || Sbjct 1765545 GGCAAGACCAGGGCACTCGTTGGGGCACATCAGCGTCCAGGTGCCGTTCTGCTCGACACG 1765604 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 |||||||| | ||| | | |||| | ||| ||||| Sbjct 1765605 CTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAA 1765640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151702967300