Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20No.14919_20[genbank_20GCA_5F002003505.1_202017-02-04] 104 sequences; 48,734,900 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq28 96.9 4e-15 >seq28 Length=668342 Score = 96.9 bits (106), Expect = 4e-15 Identities = 195/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| |||||||| ||||| ||| | || ||||| || ||||| || || || Sbjct 583489 ATATAGGTATCAATGAGTAAGGAGTATGTCTCGGAGTGAATATTCTCCATCATGATTTGG 583430 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || ||||| ||||||||||| || | || || || || || || || || | ||| Sbjct 583429 AAACCATAAAAGCATCGAGCTTCGGGAATCTGAACCTCGCCGCTGAAACGCTCAACGAGG 583370 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 ||||| |||||||||||||| |||||||| || || | ||||| || || ||| Sbjct 583369 TTCTCGTTCACGATACCGTCGGAGGCAGCAAAGAAAGCTAGGATGTGGGAGATAAAGTAT 583310 Query 16652 TTTTCGTC--AGATG-TAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCT 16708 || ||||| | || | | | | ||| || | | || ||||| | ||| | || Sbjct 583309 TTCTCGTCCTCGTTGATTCTATTGTTCCAGTCGTGCAGGTCCTTGGACAAATCAATCTCC 583250 Query 16709 TCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 || | ||||| ||| ||| | || || || ||||||| ||| || Sbjct 583249 TCAGCGGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATTTGCCAGAT 583203 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 |||||||||| |||||| |||||||||||||| || || || | | || || || ||| Sbjct 584101 TGGTAATCACCAACGCGCTTTTCGAAGAAGTTTGTCTTGCCACCGAGCGAGATGTTCTCC 584042 Query 15974 ATAAAATCAAAGGGATTAGT 15993 |||||||| ||||||||||| Sbjct 584041 ATAAAATCGAAGGGATTAGT 584022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413735161280