Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20No.14919_20[genbank_20GCA_5F002003505.1_202017-02-04] 104 sequences; 48,734,900 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq45 122 1e-22 seq21 111 2e-19 >seq45 Length=386842 Score = 122 bits (134), Expect = 1e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 || || | |||||| |||| || |||||| ||||| ||||| || ||||| || Sbjct 237903 AACCGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGT 237962 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| ||||||||||||||||| || ||||||||||||||||| | || | || ||| Sbjct 237963 CCGTCCTCTAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGAGGGATGCCTTCC 238022 Query 43086 TTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144 |||| | ||| |||| | || | | | | |||||| ||||| || || | || Sbjct 238023 TTGT-CTTGAATTTTGCTCTTCACATTGTCGATCGTGTCTGATGATTCGACCTCCAAGGT 238081 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || || || ||||| || ||||||||||| Sbjct 238082 GATGGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 238120 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || |||||| || || |||||||| ||| || || | Sbjct 237677 ACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACC 237736 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||||||||||||||| ||||| ||||||||||| | || | | ||||| Sbjct 237737 ATCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCTTCCTT 237796 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| || || | ||| | | | ||||| ||||| || || | |||| Sbjct 237797 GTCTTGGATCTTGCTCTTCA-CGTTGTCAATGGTGTCTGAGGATTCTACTTCCAATGTGA 237855 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||| | ||||| || ||||| ||||| Sbjct 237856 TGGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCAT 237892 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| || || || || |||| || || ||||| || ||||| Sbjct 238158 TCCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCGAGTTGCTTGCCGGCGAAG 238217 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||||||||||| || | || || |||||| ||| || |||| | Sbjct 238218 ATCAAACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTCGACTTGACATTG 238277 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| || ||||| |||| |||||||| || || ||||| ||||| ||| Sbjct 238278 TCAATAGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTTCCAGTTAGGGTCTTGACA 238337 Query 43173 A 43173 | Sbjct 238338 A 238338 >seq21 Length=742638 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | || | ||||||||||| || || ||||| || | || || || | Sbjct 188084 ACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCC 188025 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || || ||||||||||| | || | | |||||| Sbjct 188024 ATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCCTCCTT 187965 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | |||||||| || ||||| |||| ||||| Sbjct 187964 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGAT 187905 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || ||||| || || || ||||| Sbjct 187904 AGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 187869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816856637120