Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20No.14919_20[genbank_20GCA_5F002003505.1_202017-02-04] 104 sequences; 48,734,900 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq21 122 6e-23 seq45 116 2e-21 seq25 116 2e-21 >seq21 Length=742638 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||| ||||| | || || || ||||| |||||||||||||| Sbjct 188095 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 188036 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || || | ||||||||| ||||| || || ||||||||||| ||| Sbjct 188035 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGG 187976 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | ||| | || || || Sbjct 187975 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACC 187916 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || ||||| || || || || |||||||| Sbjct 187915 TCGAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 187869 >seq45 Length=386842 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||| |||| ||| | || || || ||||| ||||||||||||||| Sbjct 238405 CCACCGCGCAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 238464 Query 34223 -AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || || | || || | ||||| || |||||||| | || |||||||| || Sbjct 238465 AAGGTG-CGACCATCTTCAAGTTGCTTTCCGGCGAAAATCAAGCGTTGCTGGTCAGGAGG 238523 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||| | || | | || | ||||| || || || Sbjct 238524 AATACCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCGGAGGACTCCAC 238583 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || || ||||||||||| || || ||||||||||| Sbjct 238584 CTCCAAGGTGATAGTCTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 238631 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| || ||||||| ||| | ||| || ||||| |||||||||||| Sbjct 237894 CCACCACGCAACCGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTT 237953 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| || || || ||||| ||||||||||| || Sbjct 237954 AGAGTTCGTCCGTCCTCTAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGAGGG 238013 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || || ||| | || | | |||| || | |||||||| Sbjct 238014 ATGCCTTCCTTGTCTTGAATTTTGCTCTTCACATTGTCGATCGTGTCTGATGATTCGACC 238073 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || ||||| ||||| || || ||||| ||||| Sbjct 238074 TCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 238120 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||||| ||| | ||| || ||||| |||||||| ||| | Sbjct 237666 CCGCCACGAAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTC 237725 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || ||||| ||||| ||||||||||| || Sbjct 237726 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 237785 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | | || | || | ||||| || Sbjct 237786 ATACCTTCCTTGTCTTGGATCTTGCTCTTCACGTTGTCAATGGTGTCTGAGGATTCTACT 237845 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || | || || || ||||||||||| Sbjct 237846 TCCAATGTGATGGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCAT 237892 >seq25 Length=698551 Score = 116 bits (128), Expect = 2e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || || ||| |||| || | |||||| || ||||| ||| Sbjct 513820 TTCTGGATGTTGTAGTCTGAGAGGGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATG 513761 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || |||||||| || ||| | || ||||||||| ||||| ||| | || | | Sbjct 513760 AGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 513701 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | |||| || ||||| || | |||||||| ||||| ||||| || ||||| ||| Sbjct 513700 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 513641 Query 34382 ATCTGCA 34388 ||||||| Sbjct 513640 ATCTGCA 513634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071590506240