Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthoscurria_20geniculata_20[genbank_20GCA_5F000661875.1_202014- 04-29] 4,986,575 sequences; 7,178,402,394 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq326921 141 8e-29 seq780981 107 2e-18 seq17242 105 6e-18 seq28755 102 7e-17 seq438317 98.7 9e-16 seq2861173 89.7 4e-13 seq4470012 87.8 2e-12 seq314876 86.0 5e-12 seq3563114 84.2 2e-11 >seq326921 Length=5948 Score = 141 bits (156), Expect = 8e-29 Identities = 249/357 (70%), Gaps = 22/357 (6%) Strand=Plus/Minus Query 16435 TGCTTTTTGTTTAACACAGTTCATGTTCTCTATTGCATTAAAT--AAATAAtttttttCT 16492 ||||||| |||| || | || | |||| ||||||||| ||| |||||| Sbjct 5177 TGCTTTTCGTTTTACGTACGGCAACGTTTCTACGGCATTAAATGAAAACAATTTTACGAC 5118 Query 16493 TTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCC 16552 || ||||| |||||| ||||| | || | ||| ||||| |||||||||||||| || Sbjct 5117 TT--TATCTCGAATATATGTATCATTAAGAAGACTGTACATCTCTGAATGAATATTTTCT 5060 Query 16553 ATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA-GAGTAAAA 16611 || || || | ||||| ||| ||||| |||||||||| || | || Sbjct 5059 ATAGC-ATTTTAAAAC-------GCACTGTGCTTCAAGAATTTGTACTTTGTGAATGAAT 5008 Query 16612 CCTTTCTGCTAAGTTTT-CGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGT 16670 | || || |||| |||| | | ||||||||||| |||||||||||||| | | |||| Sbjct 5007 CGTT-CTACTAAATTTTTCACTCACTATTCCATCACTAGCTGCAAAAAATGTTAAAATGT 4949 Query 16671 GTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATA 16730 |||||| |||| | ||| || | | ||||| | ||| | | |||| | Sbjct 4948 ATTTAATGAAATACTGTTCATTGACCGTAAGTTGTTCCCAATGAT-------TTTTCCCA 4896 Query 16731 AATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATA 16787 |||| || ||||||||||||||||| |||||||||| || |||||||| |||||| Sbjct 4895 AATCAACTTCTTCTACAGTCCAAAAGAAAGCAACAGCTTTCTTATACATGGTCCATA 4839 >seq780981 Length=1727 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || |||||||| || | || || || |||||||||||||| ||||||| ||| ||| Sbjct 146 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCTGGCATAAGTCCTCTTTTCTTA 87 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||||||||| | ||||| |||||||| ||||| || |||||||| || ||||| ||| Sbjct 86 AGCCAAAATATTGATGCAAAGGAACCAGAGAAGAAAATTCCTTCAACAGCAGCAAAAGCA 27 Query 16379 ACCAATCGCTCACC 16392 | | || ||||| Sbjct 26 GCTACTCTTTCACC 13 >seq17242 Length=2525 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 16262 TCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATC 16321 |||||||| || | || || || |||||||||||||| ||||||| ||| |||| | Sbjct 2213 TCCCTACTGATAAGTTCATTACTGAAGGTAAGACCTGGCATAAGTCCTCTTTTCTTAAGC 2154 Query 16322 CAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACC 16381 |||||||| | ||||| |||||||| ||||| || |||||||| || ||||| ||| | Sbjct 2153 CAAAATATTGACGCAAAGGAACCAGAGAAGAAAATTCCTTCAACAGCAGCAAAAGCAGCT 2094 Query 16382 AATCGCTCACC 16392 | || ||||| Sbjct 2093 ACTCTTTCACC 2083 >seq28755 Length=37593 Score = 102 bits (112), Expect = 7e-17 Identities = 287/428 (67%), Gaps = 21/428 (5%) Strand=Plus/Minus Query 57915 TTTTCTGGTAAAAGTACAGAATTAATTAGAATATTAAAACGGTATCAAATTGCTAGGTAT 57974 || || ||||||| || ||||||||| | | | ||||||| ||||||||||| | | Sbjct 16043 TTCTCCGGTAAAACCACCGAATTAATTCGGAGAATAAAACGTTATCAAATTGCAAAGATG 15984 Query 57975 ACTTGCTTTGTAATAAAATACTCAAAAGATACTAGGTACGG---AAAAGGATTAGTAACA 58031 | ||| || | | || ||| | || |||| ||| || | ||| | ||||| || Sbjct 15983 AAATGCCTTATTAGAAGATATGCTAATGATAATAGATATAGCTCAAATGCATTAG---CA 15927 Query 58032 CACGATAATAATTCAATACCCGCAATTCCTGTTAACTCACTAAGTGAAATTAATT---GT 58088 || || | || | | |||||| | | || | ||| | | ||||| || Sbjct 15926 CATGACGGACAAACACTTTCAGCAATTTCCGCTACAAAATTAATTTAT-TTAATGCACGT 15868 Query 58089 GATAAAATTAAAGCTGATGTAATAGGAATAGACGAAGGACAATTTTTTCCAGATATTGTA 58148 || || ||| |||| | || || |||||||||| ||| ||||||||||| |||||| Sbjct 15867 TATGAA-TTA----TGATATTATCGGTATAGACGAAGCACAGTTTTTTCCAGACATTGTA 15813 Query 58149 GAATTTTGC-GAACGTATGGCAAACGATGGAAAAATTGTAATAGTTGCTGCTTTAGACGG 58207 | ||||| ||| ||||| || | |||||||| | || |||| | || | || Sbjct 15812 -ACGTTTGCAGAAGAAATGGCCAATCAAGGAAAAATAATTATCATTGCCTGTCTAAATGG 15754 Query 58208 TACATTTTTAAGAGAGCCATTTGGAAATATTTTAAAATTAATACCATGTGCTGAGTACGT 58267 |||||| |||||| | || |||||||| || || |||| |||| || || ||| Sbjct 15753 AACATTTCGAAGAGAAGCTTTCGGAAATATCTTGAATCTAATTCCATTAGCCGAAAGCGT 15694 Query 58268 TTCAAAGCTTACA-GCCGTTTGCATGAATTGTTTT-AATAGCGCATCGTTTTCTAAACGA 58325 ||| ||| | || || || ||| |||||| || || || |||||| | ||| | Sbjct 15693 GGTAAA-ATTATATGCTGTCTGTATGTCGTGTTTTCAAGAG-GCTTCGTTTACAAAATTA 15636 Query 58326 ATTGGAGA 58333 |||||||| Sbjct 15635 ATTGGAGA 15628 >seq438317 Length=14545 Score = 98.7 bits (108), Expect = 9e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 ||||| ||||| || ||||| ||||| |||||||| || || || || ||| |||| Sbjct 3419 TTTTCATTAACAATACCATCACTAGCAGCAAAAAAGGCTAGGATATGCGAAATGAAATGC 3478 Query 16685 ttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCT 16744 |||| || | | ||| |||||||| ||||||||||| | ||| || ||||| Sbjct 3479 CTTTCTGTAGATTTTAATTTCCCCCAGTCAGCTAAATCTTTTGAGAGATCCACTTCTTCA 3538 Query 16745 ACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 |||||||||| || || | ||||| || ||||||| ||| || || Sbjct 3539 GCAGTCCAAAATGATGCTTCTGCCTTCTTGTACATTTGCCAAATATC 3585 >seq2861173 Length=269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 58116 ATAGACGAAGGACAATTTTTTCCAGATATTGTAGAATTTTGC-GAACGTATGGCAAACGA 58174 ||||| |||| ||| ||||||||||| || || || ||||| ||| ||||| || | Sbjct 268 ATAGATGAAGCACAGTTTTTTCCAGACATCGT-GACGTTTGCTGAAGAAATGGCCAATCA 210 Query 58175 TGGAAAAATTGTAATAGTTGCTGCTTTAGACGGTACATTTTTAAGAGAGCCATTTGGAAA 58234 ||||||||| | || |||| | || |||| || ||| |||| | | || ||||| Sbjct 209 AGGAAAAATTATTATTATTGCCTGTCTAAACGGAACTTTTCGAAGAAAAGCTTTCGGAAA 150 Query 58235 TATTTTAAAATTAATACCATGTGCTGAGTACGTTTCAAAGCTTACA-GCCGTTTGCATGA 58293 ||||||| | ||||| || | || || |||| ||| ||||| || ||||| ||| Sbjct 149 TATTTTACATTTAATTCCGTTAGCCGAAAACGTGGTAAA-ATTACATGCTGTTTGTATGT 91 Query 58294 ATTGTTTTAATAGCGCATCGTTTTCTAAACGAATTGGAGA 58333 |||||| | || || ||| | ||| ||||||||| Sbjct 90 CGTGTTTTCAAGAAGCTTCATTTACAAAATTAATTGGAGA 51 >seq4470012 Length=581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 57885 GGACATATACAGATTATATTAGGCCCAATGTTTTCTGGTAAAAGTACAGAATTAATTAGA 57944 ||||| || || |||||||| || | ||||||||||| |||| |||||||||||| | Sbjct 120 GGACAAATCCAAATTATATTCGGACTCATGTTTTCTGGAAAAACGACAGAATTAATTCGG 179 Query 57945 ATATTAAAACGGTATCAAATTGCTAGGTATACTTGCTTTGTAATAAAATACTCAAAAGAT 58004 ||| |||||||||||||||| | ||| ||| | | ||||||||| | | ||| Sbjct 180 CGATTGAAACGGTATCAAATTGTAAATCATAAGTGCCTAATTATAAAATACGCTCACGAT 239 Query 58005 ACTAGGTA 58012 | ||| || Sbjct 240 AATAGATA 247 >seq314876 Length=46846 Score = 86.0 bits (94), Expect = 5e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 58103 TGATGTAATAGGAATAGACGAAGGACAATTTTTTCCAGATATTGTAGAATTTTGC-GAAC 58161 |||| | || || |||||||||| ||| ||||||||||| || || || ||||| ||| Sbjct 32823 TGATATCATCGGTATAGACGAAGCACAGTTTTTTCCAGACATCGT-GACGTTTGCTGAAG 32881 Query 58162 GTATGGCAAACGATGGAAAAATTGTAATAGTTGCTGCTTTAGACGGTACATTTTTAAGAG 58221 ||||| || | |||||||| | || |||| ||||||||| || ||| ||||| Sbjct 32882 AAATGGCCAATCAAGGAAAAATAATTATCATTGCCTGTTTAGACGGAACTTTTCGAAGAG 32941 Query 58222 AGCCATTTGGAAATATTTTAAAATTAATACC 58252 | | || |||||||| || | ||||| || Sbjct 32942 AAGCTTTCGGAAATATCTTGCATTTAATTCC 32972 >seq3563114 Length=337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 57885 GGACATATACAGATTATATTAGGCCCAATGTTTTCTGGTAAAAGTACAGAATTAATTAGA 57944 ||||| || || |||||||| || |||||||||||||||| |||||||||||| | Sbjct 48 GGACAAATCCAAATTATATTCGGAATCATGTTTTCTGGTAAAACGACAGAATTAATTCGG 107 Query 57945 ATATTAAAACGGTATCAAATTGCTAGGTATACTTGCTTTGTAATAAAATAC 57995 ||| ||||||||||||||||| | ||| || | | ||||||||| Sbjct 108 CGATTGAAACGGTATCAAATTGCAAATCATAAATGTCTAATTATAAAATAC 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434406355436200