Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthoscurria_20geniculata_20[genbank_20GCA_5F000661875.1_202014- 04-29] 4,986,575 sequences; 7,178,402,394 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq17242 113 4e-20 seq780981 105 6e-18 seq326921 105 6e-18 seq2861173 86.0 6e-12 seq438317 86.0 6e-12 >seq17242 Length=2525 Score = 113 bits (124), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 14230 ATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAA 14289 ||| ||||| |||||||| || || || | |||||||| | ||||| ||| || | Sbjct 2214 ATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCTGGCATAAGTCCTCTTTTCTTAAG 2155 Query 14290 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14349 ||||||||||| || || || || || ||||| ||||| ||||| |||||||| || Sbjct 2154 CCAAAATATTGACGCAAAGGAACCAGAGAAGAAAATTCCTTCAACAGCAGCAAAAGCAGC 2095 Query 14350 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--ATCCATTTTCTAGCCCATTCAGAt 14407 || || ||| ||||| ||||| || ||| ||| ||||| || |||||| ||| Sbjct 2094 TACTCTTTCACCAAATGATGCATTAGTGT--GATTAATCCAGTTCAAAGCCCAAACAGCC 2037 Query 14408 ttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 || || |||||| | | |||||||| ||||| || Sbjct 2036 TTCTTCTTAATACATGGGAGAGTTTCAATGGCATTGAA 1999 >seq780981 Length=1727 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||| ||||| |||||||| || || || | |||||||| | ||||| ||| | Sbjct 148 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCTGGCATAAGTCCTCTTTTCT 89 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||||||||||| || || || || || ||||| ||||| ||||| |||||||| | Sbjct 88 TAAGCCAAAATATTGATGCAAAGGAACCAGAGAAGAAAATTCCTTCAACAGCAGCAAAAG 29 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTT 14373 | || || ||| ||||| ||||| || Sbjct 28 CAGCTACTCTTTCACCAAATGATGCATT 1 >seq326921 Length=5948 Score = 105 bits (116), Expect = 6e-18 Identities = 203/289 (70%), Gaps = 24/289 (8%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 ||| ||||||||| |||| | || ||||| || || || || ||||| ||||| || | Sbjct 5108 AATATATGTATCATTAAGAAGACTGTACATCTCTGAATGAATATTTTCTATAGC-ATTTT 5050 Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCA 14591 ||||| || | | ||||| |||||| | ||| | || || ||| | | Sbjct 5049 AAAACGC-----AC-TGT-GCTTCAAGAATTTGTACTTTGTGAATGAA-TCGTTCTACTA 4998 Query 14592 AATTTT-CATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAG 14650 |||||| || | ||||| |||||||||||||||||||||| || |||| |||||| || Sbjct 4997 AATTTTTCACTCACTATTCCATCACTAGCTGCAAAAAATGTTAAAATGTATTTAATGAAA 4938 Query 14651 TATTGCTCTTCATTG---CTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACT 14707 || || ||||||| | |||| || ||||| | | ||| | ||| ||| Sbjct 4937 TA---CTGTTCATTGACCGTAAGTTGTTCCCAAT--GATTTTTCC-----CAAATCAACT 4888 Query 14708 TCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATA 14756 || || || |||||||| |||||||||||| |||||||| ||||| Sbjct 4887 TCTTCTACAGTCCAAAAGAAAGCAACAGCTTTCTTATACATGGTCCATA 4839 >seq2861173 Length=269 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 57036 TATAGATGAAGGCCAATTCTTTAAAGATATTGTATCTTTTTCTGAAAATATGGCAAATAT 57095 ||||||||||| || || ||| ||| || || | ||| ||||| | ||||| ||| Sbjct 269 TATAGATGAAGCACAGTTTTTTCCAGACATCGTGACGTTTGCTGAAGAAATGGCCAATCA 210 Query 57096 GGGAAAGATAATTATAATAGCTGCACTAGATAGCACGTTTCAACGAAAAGAATTTAATGA 57155 ||||| || ||||| || || ||| | | || |||| | |||||| || | Sbjct 209 AGGAAAAATTATTATTATTGCCTGTCTAAACGGAACTTTTCGAAGAAAAGCTTTCGGAAA 150 Query 57156 TATATTGAAATTAATACCGTTATCTGAAAAAGTAACAAAATTAAACGCTGTATGTATGGA 57215 ||| || | ||||| |||||| | ||||| || ||||||| | ||||| |||||| Sbjct 149 TATTTTACATTTAATTCCGTTAGCCGAAAACGTGGTAAAATTACATGCTGTTTGTATGTC 90 Query 57216 ATGTTATAAAGACGCCGCATTT 57237 |||| | |||| || ||||| Sbjct 89 GTGTTTTCAAGAAGCTTCATTT 68 >seq438317 Length=14545 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 14589 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAAT-- 14646 ||| |||||||||||| |||||||||||||| |||||||| || | || | ||| Sbjct 3414 CCAGATTTTCATTAACAATACCATCACTAGCAGCAAAAAAGGCTAGGATATGCGAAATGA 3473 Query 14647 AAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTAC 14706 || | || || | ||| | | ||| ||| || |||||||| || || ||||| || Sbjct 3474 AATGCCTTTCTGTAGATT--TTAATTTCCCCCAGTCAGCTAAATCTTTTGAGAGATCCAC 3531 Query 14707 TTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATA 14766 ||| ||| | |||||||| || | || || || |||||| ||| || || ||| Sbjct 3532 TTCTTCAGCAGTCCAAAATGATGCTTCTGCCTTCTTGTACATTTGCCAAATATCAGGATA 3591 Query 14767 TAATATAGGAAAAACTACAAATC 14789 || || |||| |||||||| Sbjct 3592 CTCGATGGGGAAAATTACAAATC 3614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452279943621000