Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthoscurria_20geniculata_20[genbank_20GCA_5F000661875.1_202014- 04-29] 4,986,575 sequences; 7,178,402,394 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq4916 102 1e-16 seq37387 86.0 8e-12 seq15653 84.2 3e-11 >seq4916 Length=195441 Score = 102 bits (112), Expect = 1e-16 Identities = 105/136 (77%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 146007 CATAATTTAGTTGCGTTAAAACATTCTGTGTTCTTGTCGACTACGAGCTTAAAATCTCTA 146066 ||||| ||||| || |||||| || | || || || || | ||| ||||||||||||| | Sbjct 157937 CATAACTTAGTAGCATTAAAATATCCCGTATTTTTATCTATTACCAGCTTAAAATCTCCA 157996 Query 146067 AATAACCCATAATAAAAGTTATCTTTGATTTTTTCATAACAAATGTCATTTAATGATGCC 146126 || | ||||| | | ||||||||||||| ||||||||| || || |||||||| | | Sbjct 157997 AAGAGTCCATACCAGTAATTATCTTTGATTTGTTCATAACATATATCTTTTAATGAAGAC 158056 Query 146127 A-TTAttttttttAAT 146141 | ||||| | ||| || Sbjct 158057 ATTTATTATATTTCAT 158072 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 145221 CATAATTTAGTTGCGTTAAAACATTCTGTGTTCTTGTCGACTACGAGCTTAAAATCTCCA 145280 ||||| ||||| || |||||| || | || || || || | ||| ||||||||||||||| Sbjct 157937 CATAACTTAGTAGCATTAAAATATCCCGTATTTTTATCTATTACCAGCTTAAAATCTCCA 157996 Query 145281 AATAACCCATAATAAAAGTTAtttttgattttttCATAACAAACGTCATTTAATGATGCC 145340 || | ||||| | | |||| |||||||| ||||||||| | || |||||||| | | Sbjct 157997 AAGAGTCCATACCAGTAATTATCTTTGATTTGTTCATAACATATATCTTTTAATGAAGAC 158056 Query 145341 AT 145342 || Sbjct 158057 AT 158058 >seq37387 Length=107953 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/152 (73%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 145199 AAATCTTTTTCCTCCACTATTGCATAATTTAGTTGCGTTAAAACATTCTGTGTTCTTGTC 145258 |||||||||||||||| ||||| | |||| ||| | ||| || |||| || ||||| Sbjct 88557 AAATCTTTTTCCTCCATCTTTGCACAGTTTACCTGCACTGAAAAATCCTGTATTTTTGTC 88498 Query 145259 GACTACGAGCTTAAAATCTCCAAATAACCCATAATAAAAGTTAtttttgattttttCATA 145318 || | |||||||||||||||| ||||| | | |||| |||||||| || | Sbjct 88497 TGTTATAATTTTAAAATCTCCAAATAGTCCATACCAGCACTTATCTTTGATTTGCACAGA 88438 Query 145319 ACAAACGTCATTTAATGATGCCATATTTTTAG 145350 ||||| |||| ||| || | ||| || |||| Sbjct 88437 ACAAATGTCAGCTAAAGAAGACAT-TTATTAG 88407 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 145941 TATTCCATTAATTTTTTAGATTTTTCAAGCCGAGTCCACTGTCTAAATTGTTTACCTCCA 146000 |||| || |||| |||||||| || | | | ||| | | |||| ||| |||||| Sbjct 88601 TATTTTATCAATTGTTTAGATTGTTTATTCTCAAACCATTTTGAAAATCTTTTTCCTCCA 88542 Query 146001 CTATTGCATAATTTAGTTGCGTTAAAACATTCTGTGTTCTTGTCGACTACGAGCTTAAAA 146060 ||||| | |||| ||| | ||| || |||| || ||||| || | |||||| Sbjct 88541 TCTTTGCACAGTTTACCTGCACTGAAAAATCCTGTATTTTTGTCTGTTATAATTTTAAAA 88482 Query 146061 TCTCTAAATAACCCATAATAAAAGTTATCTTTGATTTTTTCATAACAAATGTCATTTAAT 146120 |||| ||||| ||||| | | ||||||||||||| || ||||||||||| ||| Sbjct 88481 TCTCCAAATAGTCCATACCAGCACTTATCTTTGATTTGCACAGAACAAATGTCAGCTAAA 88422 Query 146121 GATGCCATT 146129 || | |||| Sbjct 88421 GAAGACATT 88413 >seq15653 Length=103081 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 172358 TTGCCATGGTAAAATACCACCAGA-CCACTCTATCATATTATAGCCTAGAATTTCTAAAT 172416 || ||| ||| || |||| ||| ||||| | ||||||||| || || ||||| |||| Sbjct 92729 TTCCCAAGGTTAATGTCCAC-AGAGCCACTGAAGCATATTATAACCAAGGATTTCCAAAT 92671 Query 172417 CTCCTCTTCTTGATTCAACACCTTGATGGCTATCTCTGCTTGTATATTTTAATGTACCAT 172476 | ||| |||||| | | ||| ||| ||||||||||||| ||| || ||| |||| Sbjct 92670 CACCTAGTCTTGAATGGGCTCCTATGTGGGCATCTCTGCTTGTAAATTCTATTGTTCCAT 92611 Query 172477 TATGTGCTTTTTTAGGATCTGGTTGATA 172504 ||||||||| ||||||| || ||| Sbjct 92610 CATGTGCTTTACGAGGATCTTCTTTATA 92583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 637440081354000