Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthoscurria_20geniculata_20[genbank_20GCA_5F000661875.1_202014- 04-29] 4,986,575 sequences; 7,178,402,394 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq438317 113 4e-20 seq1187548 102 7e-17 seq247341 96.9 3e-15 seq2361161 93.3 4e-14 seq197271 93.3 4e-14 seq4967570 91.5 1e-13 seq21712 91.5 1e-13 seq2976538 89.7 4e-13 seq2316783 89.7 4e-13 seq1107188 89.7 4e-13 seq4952844 86.0 5e-12 seq215054 86.0 5e-12 seq70167 86.0 5e-12 seq329421 84.2 2e-11 seq4202 84.2 2e-11 >seq438317 Length=14545 Score = 113 bits (124), Expect = 4e-20 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 |||||||| | |||| ||| ||||| | ||||||| || || || || || ||||| Sbjct 3645 GATGAACCCTTGTTGCGAGATAATCCTAGACGATTTGTAATTTTCCCCATCGAGTATCCT 3586 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | |||||||| |||||||||||||| |||||||| | |||||||| || Sbjct 3585 GATATTTGGCAAATGTACAAGAAGGCAGAAGCATCATTTTGGACTGCTGAAGAAGTGGAT 3526 Query 57627 CTGTCTAAGGATCTGAGC-GATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 || || || ||| | ||| || |||| | ||| | || || |||| ||| Sbjct 3525 CTCTCAAAAGAT-TTAGCTGACTGGGGGAAATTAAAATCTACAGAAAGGCATTTCATTTC 3467 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || | | || ||||| || || |||||||||||||| || ||| |||| Sbjct 3466 GCATATCCTAGCCTTTTTTGCTGCTAGTGATGGTATTGTTAATGAAAATCTGGT 3413 >seq1187548 Length=1734 Score = 102 bits (112), Expect = 7e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || ||||||||| || || || || || || ||||| || ||||| | || || ||||| Sbjct 381 AACCATGCAAATCTTTGTTAAAACACTCACTGGCAAGACCATCACACTTGAGGTGGAACC 440 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | |||| || || | ||| ||| || ||||| | || || || Sbjct 441 AAGTGACACAATAGAAAATGTGAAGGCTAAAATCCAGGATAAAGAAGGAATTCCACCTGA 500 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 ||| ||| | || || || |||||||||||||||||||| | | | || || |||| Sbjct 501 CCAACAGAGGCTGATTTTTGCTGGCAAACAGTTGGAAGA-TGGACGCACCTTGTCTGATT 559 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||| ||||||||||| || ||| | ||| |||| ||| |||| Sbjct 560 ATAATATTCAAAAAGAGTCCACTTTGCATTTGGTCCTTCGACT 602 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| || ||||| || || | || || ||||| Sbjct 1516 ATGCAGATCTTTGTGAAGACACTGACTGGTAAAACAATAACTCTTGAAGTGGAACCAAGT 1575 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | || ||| || |||||| | || || || || Sbjct 1576 GACACAATTGAAAATGTGAAGGCTAAGATTCAGGATAAAGAAGGCATTCCCCCAGATCAA 1635 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | || || || ||||| |||||||||||||| | | | || || |||||||| Sbjct 1636 CAGAGACTGATCTTTGCTGGAAAACAGTTGGAAGA-TGGACGCACCTTGTCTGATTATAA 1694 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || ||| | ||| |||| ||| |||| Sbjct 1695 TATTCAAAAAGAGTCCACTTTGCATTTGGTCCTTCGACT 1733 >seq247341 Length=25763 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/145 (75%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 58333 AAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaa 58392 ||||||| |||||||||||| ||| ||| || ||||| || || ||||||||||||| Sbjct 16303 AAAATCCATTTGATTTTATGGATCACATCAGTCTGGAGGGAAAAACTAACTTTTTCGAAA 16362 Query 58393 aaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAGTTGGAGGACGATA 58452 | |||||| ||||||||||| | || || ||| || |||| ||| ||| | Sbjct 16363 AGAAAGTTGCAGAATATCAAAAGTGTGGAGTAATG-GC-----CAAGAAGGAAGACCACT 16416 Query 58453 TTTTCACTTTGGATGCTGCCTTTTA 58477 || ||||||||||||| |||||| Sbjct 16417 GCTTTACTTTGGATGCTGACTTTTA 16441 >seq2361161 Length=242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| || || || || ||||| || ||||| | || || ||||| |||| | Sbjct 1 TTCGTCAAAACACTAACTGGCAAGACCATCACACTTGAGGTGGAACCAAGTGACACGATA 60 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 |||| || ||| | ||| ||| || |||||| | || || ||||||||| | || Sbjct 61 GAAAATGTGAAAGCCAAAATCCAGGATAAAGAAGGCATTCCACCAGACCAGCAGAGGCTG 120 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAACATTCAAAA 31380 ||||| |||||||||||| ||||||| | | | || || ||||| | ||| || || Sbjct 121 ATATTTGCTGGCAAACAGCTGGAAGA-TGGACGCACCTTGTCTGATTACAGCATCCAGAA 179 Query 31381 AGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || ||||| ||| |||| ||| |||| Sbjct 180 GGAGTCTACTCTACATTTGGTTCTTCGACT 209 >seq197271 Length=6114 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 31219 AGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAG 31278 ||| ||||| || || | || |||||||| |||| | | |||| || || | Sbjct 1387 AGGTAAAACCATTACTTTGGAAGTTGAACCCAGTGACACTATAGAAAACGTGAAGGCAAA 1446 Query 31279 AATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACA 31338 ||| || || |||||| | || || || ||||| ||||| || || || || ||||| Sbjct 1447 AATTCAAGATAAAGAAGGCATTCCACCTGATCAGCAACGTCTCATTTTTGCAGGAAAACA 1506 Query 31339 GTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCT 31398 ||||||||| | || | ||||| || ||||| |||||||| ||||||||||| Sbjct 1507 GTTGGAAGATGGCAGAACACTCTCTGATTACAATATTCAGAAAGAATCTACTCTTCATCT 1566 Query 31399 GGTACTTAGACTGAGGGGCGG 31419 || || |||||||| || || Sbjct 1567 TGTCCTCAGACTGAGAGGAGG 1587 >seq4967570 Length=1741 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 ||||||| ||| ||| ||||| ||||| |||| | |||| | ||||||||||| | | Sbjct 1582 AGGGTCTTCATTGTGACTTTGCCTGCCTGATGTTCAGTCACCTAGTCAATAAACCATCTC 1523 Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218 ||| | || | | ||||| | || || || || || ||| | |||||| | || | Sbjct 1522 AGGAGAGAATAATTCAGATTATATCAGATGCTGTTGCAATTGAACAGGAGTTTCTGACTG 1463 Query 58219 AAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGT 58278 | || |||| || || || | || ||||||| || | | ||| |||||||||| | Sbjct 1462 ATGCATTACCTGTTGCTCTGATTGGCATGAACAGTGCTCTTATGAATCAGTACATTGAAT 1403 Query 58279 TTGTTGCCGA 58288 ||||||| || Sbjct 1402 TTGTTGCTGA 1393 >seq21712 Length=99785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || | ||||| ||||| || || | || |||||||| Sbjct 91071 ATGCAGATCTTCGTCAAAACCCCTACAGGTAAAACCATTACTTTGGAAGTTGAACCCAGT 91130 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || || ||| | ||| || || |||||| | || || || || Sbjct 91131 GACACTATTGAAAACGTGAAGACAAA-AATTCAAGAAAAAGAAGGCATTCCACCTGATCA 91189 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTA--TGACTATGAGCGATTAT 31369 ||| ||||| | || ||||| || ||||||||| | | | ||| | | |||| Sbjct 91190 GCAACGTCTCAGTTTTGCTGGAAAGCAGTTGGAAAATGGCAGATCACTCTCTG--ATTAC 91247 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| |||||| | ||||||||||| || || ||||||| || || Sbjct 91248 AATATTCAGAAAGAAACTACTCTTCATCTTGTCCTCCGACTGAGAGGAGG 91297 >seq2976538 Length=278 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 31218 CAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGA 31277 |||||||||| || || | || || ||||| || | | |||| || ||| | Sbjct 53 CAGGCAAAACCATAACTCTGGAAGTAGAACCCAGTGATACCATAGAAAATGTGAAAGCCA 112 Query 31278 GAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAAC 31337 ||| |||||||||||| | || || ||||||||| | |||| || ||||| || | Sbjct 113 AAATTCAAGACAAGGAAGGCATTCCTCCAGACCAGCAGTGCTTAATTTTTGCTGGAAAGC 172 Query 31338 AGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATC 31397 || ||||||| | |||| || || || ||||| || || ||||| || ||||||| Sbjct 173 AGCTGGAAGATGGCAGGACTTTGTCAGACTACAACATCCAGAAGGAATCAACCCTTCATC 232 Query 31398 TGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || || || || Sbjct 233 TTGTACTAAGGCTTAGAGGAGG 254 >seq2316783 Length=240 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 || |||||||| | || || |||||||||||||| || || ||||| || ||| | ||| Sbjct 27 GATAAGGAAGGTATTCCTCCTGACCAGCAGCGTCTTATTTTTGCTGGAAAGCAGCTTGAA 86 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | || || ||||||||||||||||| ||||| ||||| ||||| || || Sbjct 87 GACGGTCGCACGCTGTCAGATTATAACATTCAAAAGGAATCAACTCTGCATCTTGTGCT 145 >seq1107188 Length=1186 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 || || |||||| | || || ||||| |||||||| || || ||||| || ||||||||| Sbjct 316 GATAAAGAAGGCATTCCACCTGACCAACAGCGTCTCATTTTTGCTGGAAAGCAGTTGGAA 375 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || | || | |||||||| ||||| |||||||| || |||||||| || || Sbjct 376 GATGGCAGAACACTCTCAGATTATAATATTCAGAAAGAATCCACACTTCATCTTGTCTTT 435 Query 31406 AGACTGAGGGGCGG 31419 || ||||| || || Sbjct 436 AGGCTGAGAGGAGG 449 >seq4952844 Length=1519 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 31218 CAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGA 31277 |||| ||||| || || | || |||||||| |||| |||| | || || | Sbjct 21 CAGGTAAAACCATTACTTTGGAAGTTGAACCCAGTGACACCATCGAGAATGTGAAGGCAA 80 Query 31278 GAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAAC 31337 ||| || || |||||| | || || || || |||||||| || || ||||| || | Sbjct 81 AAATTCAAGATAAAGAAGGCATTCCACCTGATCAACAGCGTCTCATTTTTGCTGGAAAGC 140 Query 31338 AGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATC 31397 |||||||||| | || | |||||||| ||||| |||||||| || ||||||| Sbjct 141 AGTTGGAAGATGGCAGAACACTCTCAGATTATAATATTCAGAAAGAATCCACACTTCATC 200 Query 31398 TGGTACTTAGACTGAGGGGCGG 31419 | || || || ||||| || || Sbjct 201 TTGTCCTCAGGCTGAGAGGAGG 222 >seq215054 Length=1089 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| ||||| ||||| || || ||| | || || || || Sbjct 370 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACCATAACCCTGGAAGTGGAGCCCAGT 311 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | ||| ||| || ||||| | ||||| |||||| Sbjct 310 GACACCATTGAAAATGTCAAGGCCAAGATACAGGATAAAGAAGGTATACCGCCAGACCAG 251 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||||| || || || || || ||||||||||| Sbjct 250 CAACGTCTGATTTTTGCAGGAAAGCAGTTGGAAGA 216 >seq70167 Length=66857 Score = 86.0 bits (94), Expect = 5e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| ||| || |||| || |||||||| ||||||||||| || ||||| || || Sbjct 49960 ACCTCATCTGCAGAGCTGTATTCAACAATTTCTGTACATAGATTACTGCACTTGATGGTT 50019 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || || || ||| || ||| || || || | ||| || ||||||||||| || ||| Sbjct 50020 CCTAAGTTTTGCTGATTTGATTTACGGTTACATGCATCTTTATAGAGCATGTAAGGAGTG 50079 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGC 23214 || || || | ||| || || || || || ||| | || ||| || Sbjct 50080 CCAGTTTCAATCTGAGAGTCAATAATGGCATACCATAAAGACTGGGC 50126 >seq329421 Length=21321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 || |||||||| | || || || ||||||||||| || || ||||| || ||| | ||| Sbjct 18744 GATAAGGAAGGTATTCCTCCTGATCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAA 18685 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || | ||| || ||||||||||||||||| ||||| ||||| ||| | ||||| Sbjct 18684 GATGGTCGCACTCTGTCAGATTATAACATTCAAAAGGAATCTACTCTGCATTTAGTACT 18626 >seq4202 Length=39063 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| || || || || ||||| || ||||| | || || ||||| |||| | Sbjct 37708 TTCGTCAAAACACTAACTGGCAAGACCATCACACTTGAGGTGGAACCAAGTGACACGATA 37649 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 |||| || ||| | |||| ||| || |||||| | || || ||||||||| | || Sbjct 37648 GAAAATGTGAAAGCCAAAATACAGGATAAAGAAGGCATTCCACCAGACCAGCAGAGGCTG 37589 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| |||||||||||| ||||||| Sbjct 37588 ATATTTGCTGGCAAACAGCTGGAAGA 37563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418678450568225