Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthoscurria_20geniculata_20[genbank_20GCA_5F000661875.1_202014- 04-29] 4,986,575 sequences; 7,178,402,394 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq438317 132 4e-26 seq326921 122 8e-23 seq70167 109 5e-19 seq4470012 84.2 2e-11 >seq438317 Length=14545 Score = 132 bits (146), Expect = 4e-26 Identities = 149/198 (75%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 12016 ATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTA 12075 ||| ||||| |||||||||||||||| |||||||| ||||| ||||| || || | Sbjct 3418 ATTTTCATTAACAATACCATCACTAGCAGCAAAAAAGGCTAGGATATGCGAAATGAAATG 3477 Query 12076 TTTTTCGTCTTTAG---TTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTC 12132 |||| | ||| ||||||| |||| ||| ||||||||||||| | ||| ||||| Sbjct 3478 CCTTTC---TGTAGATTTTAATTTCCCCCAGTCAGCTAAATCTTTTGAGAGATCCACTTC 3534 Query 12133 TTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTT 12192 |||| | |||||||| ||| ||| | || ||||||| ||| |||||| |||||| Sbjct 3535 TTCAGCAGTCCAAAATGATGCTTCTGCCTTCTTGTACATTTGCCAAATATCAGGATACTC 3594 Query 12193 AATAGGGAAAATAACGAA 12210 || |||||||| || || Sbjct 3595 GATGGGGAAAATTACAAA 3612 >seq326921 Length=5948 Score = 122 bits (134), Expect = 8e-23 Identities = 244/358 (68%), Gaps = 18/358 (5%) Strand=Plus/Minus Query 11828 GCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATA 11887 ||||| ||||||| | || ||||||| || |||||| || || |||| | | Sbjct 5176 GCTTTTCGTTTTACGTACGGCAACGTTTCTACGGCATTAAATGAAAACAATTTTACGACT 5117 Query 11888 TTATCTCTTACATATGTATCTATTAATAA-ACTATACATTTCTGAATGAATATTTTCCAT 11946 ||||||| | ||||||||| ||||| || ||| ||||| ||||||||||||||||| || Sbjct 5116 TTATCTCGAATATATGTATC-ATTAAGAAGACTGTACATCTCTGAATGAATATTTTCTAT 5058 Query 11947 AGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCT 12006 ||| |||| ||| | || |||| || | ||||| | | |||| Sbjct 5057 AGC-ATTTTAAA-------ACGCACTGTGCTTCAAGAATTTGTACTTTGTGAATGAATCG 5006 Query 12007 TTCCGCTAAA-TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTT 12065 ||| ||||| || ||| | || || |||||||||| ||||||||||| || || | || Sbjct 5005 TTCTACTAAATTTTTCACTCACTATTCCATCACTAGCTGCAAAAAATGTTAAAATGTATT 4946 Query 12066 TTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAAT 12125 | || || || | ||| | || | || ||||||| || |||| |||| Sbjct 4945 TAATGAAATACTGTTCATTGACCGTAAGTTGTTCCCAATGAT-------TTTTCCCAAAT 4893 Query 12126 CTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATC 12183 | |||||||| || |||||||| || || | || |||||||| |||| | ||| Sbjct 4892 CAACTTCTTCTACAGTCCAAAAGAAAGCAACAGCTTTCTTATACATGGTCCATAAATC 4835 >seq70167 Length=66857 Score = 109 bits (120), Expect = 5e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||||||||||||||||| |||| | ||||||||| ||||| ||||| Sbjct 30008 ACCTGAAACTCTCCAGATAATACTCTTCGGATATAGAAATTGCTAGTGTATGGCTCAATA 30067 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || || | || || || || |||||||| |||||||| | Sbjct 30068 GACTCATTATTTCCAAGAATCTGTGCAGTCGAAGCTGTTGGCATTGGAGCTATTAGCAAA 30127 Query 37258 CTATTTCTCAATCCATGT 37275 || || || | |||||| Sbjct 30128 CTGTTCCTTACACCATGT 30145 >seq4470012 Length=581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 55659 TTATATTAGGACCTATGTTCTCTGGAAAGAGTACAGAATTAATTAGGTTAGTAAACCGGT 55718 ||||||| |||| ||||| |||||||| | |||||||||||| || | | || |||| Sbjct 133 TTATATTCGGACTCATGTTTTCTGGAAAAACGACAGAATTAATTCGGCGATTGAAACGGT 192 Query 55719 ATCAAATAGCCACGTATAATTGTAGAGTTATAAAATATTCTAAAGATAATAGATAT 55774 ||||||| | | |||| || | |||||||||| || | |||||||||||| Sbjct 193 ATCAAATTGTAAATCATAAGTGCCTAATTATAAAATACGCTCACGATAATAGATAT 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439320624318000