Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthoscurria_20geniculata_20[genbank_20GCA_5F000661875.1_202014- 04-29] 4,986,575 sequences; 7,178,402,394 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq17242 118 1e-21 seq326921 111 1e-19 seq780981 109 5e-19 seq438317 84.2 2e-11 >seq17242 Length=2525 Score = 118 bits (130), Expect = 1e-21 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 13898 ATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAA 13957 ||| ||||| |||||||| || || || | |||||||| | ||||| ||| || | Sbjct 2214 ATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCTGGCATAAGTCCTCTTTTCTTAAG 2155 Query 13958 CCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14017 ||||||||||| ||||| || || || ||||| ||||| ||||| |||||||| || Sbjct 2154 CCAAAATATTGACGCAAAGGAACCAGAGAAGAAAATTCCTTCAACAGCAGCAAAAGCAGC 2095 Query 14018 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--ATCCATTTTCTAGCCCATTCAGAt 14075 || || ||| ||||| ||||| || ||| ||| ||||| || |||||| ||| Sbjct 2094 TACTCTTTCACCAAATGATGCATTAGTGT--GATTAATCCAGTTCAAAGCCCAAACAGCC 2037 Query 14076 ttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 || || |||||| | | |||||||| ||||| || Sbjct 2036 TTCTTCTTAATACATGGGAGAGTTTCAATGGCATTGAA 1999 >seq326921 Length=5948 Score = 111 bits (122), Expect = 1e-19 Identities = 202/289 (70%), Gaps = 24/289 (8%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 ||| ||||||||| |||| | || ||||| || || || || ||||| ||||| || | Sbjct 5108 AATATATGTATCATTAAGAAGACTGTACATCTCTGAATGAATATTTTCTATAGC-ATTTT 5050 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCA 14259 ||||| ||| ||||| |||||||| || | || || ||| | | Sbjct 5049 AAAAC-------GCACTGTGCTTCAAGAATTTGTACTTTGTGAATGAA-TCGTTCTACTA 4998 Query 14260 AATTTT-CATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAG 14318 |||||| || | ||||| |||||||||||||||||||||| || |||| |||||| || Sbjct 4997 AATTTTTCACTCACTATTCCATCACTAGCTGCAAAAAATGTTAAAATGTATTTAATGAAA 4938 Query 14319 TATTGCTCTTCATTG---TTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACT 14375 || || ||||||| | |||| || ||||| ||| ||| | ||| ||| Sbjct 4937 TA---CTGTTCATTGACCGTAAGTTGTTCCCAAT--GATTTTTCC-----CAAATCAACT 4888 Query 14376 TCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATA 14424 || || || |||||||| ||| |||||||| |||||||| ||||| Sbjct 4887 TCTTCTACAGTCCAAAAGAAAGCAACAGCTTTCTTATACATGGTCCATA 4839 >seq780981 Length=1727 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| ||||| |||||||| || || || | |||||||| | ||||| ||| | Sbjct 148 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCTGGCATAAGTCCTCTTTTCT 89 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||||| ||||| || || || ||||| ||||| ||||| |||||||| | Sbjct 88 TAAGCCAAAATATTGATGCAAAGGAACCAGAGAAGAAAATTCCTTCAACAGCAGCAAAAG 29 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTT 14041 | || || ||| ||||| ||||| || Sbjct 28 CAGCTACTCTTTCACCAAATGATGCATT 1 >seq438317 Length=14545 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/206 (70%), Gaps = 10/206 (5%) Strand=Plus/Plus Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 ||| |||||||||||| |||||||||||||| |||||||| || || | | | || Sbjct 3414 CCAGATTTTCATTAACAATACCATCACTAGCAGCAAAAAAGGC---TAGGATATGCGAAA 3470 Query 14317 AGTATTGCTCTTCATTGTTGAGTTT--TTT---CCAATCGGATAAATCCTTAGAAAGATC 14371 | | ||| ||| ||| || ||| ||| ||| || | |||||| || || ||||| Sbjct 3471 TGAAATGCCTTTC--TGTAGATTTTAATTTCCCCCAGTCAGCTAAATCTTTTGAGAGATC 3528 Query 14372 TACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTT 14431 ||||| ||| | |||||||| || | || || || |||||| ||| || || Sbjct 3529 CACTTCTTCAGCAGTCCAAAATGATGCTTCTGCCTTCTTGTACATTTGCCAAATATCAGG 3588 Query 14432 ATATAATATAGGAAAAACTACAAATC 14457 ||| || || |||| |||||||| Sbjct 3589 ATACTCGATGGGGAAAATTACAAATC 3614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449825504355000