Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthoscurria_20geniculata_20[genbank_20GCA_5F000661875.1_202014- 04-29] 4,986,575 sequences; 7,178,402,394 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq17242 113 4e-20 seq780981 105 6e-18 seq326921 98.7 9e-16 seq438317 87.8 2e-12 seq2861173 86.0 6e-12 >seq17242 Length=2525 Score = 113 bits (124), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 13686 ATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAA 13745 ||| ||||| |||||||| || || || | |||||||| | ||||| ||| || | Sbjct 2214 ATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCTGGCATAAGTCCTCTTTTCTTAAG 2155 Query 13746 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 13805 ||||||||||| || || || || || ||||| ||||| ||||| |||||||| || Sbjct 2154 CCAAAATATTGACGCAAAGGAACCAGAGAAGAAAATTCCTTCAACAGCAGCAAAAGCAGC 2095 Query 13806 TAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCCATTTTCTAGCCCATTCAGAt 13863 || || ||| ||||| ||||| || || |||| ||||| || |||||| ||| Sbjct 2094 TACTCTTTCACCAAATGATGC--ATTAGTGTGATTAATCCAGTTCAAAGCCCAAACAGCC 2037 Query 13864 ttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 || || |||||| | | ||||| || |||||||| Sbjct 2036 TTCTTCTTAATACATGGGAGAGTTTCAATGGCATTGAA 1999 >seq780981 Length=1727 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||| ||||| |||||||| || || || | |||||||| | ||||| ||| | Sbjct 148 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCTGGCATAAGTCCTCTTTTCT 89 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||||||||||| || || || || || ||||| ||||| ||||| |||||||| | Sbjct 88 TAAGCCAAAATATTGATGCAAAGGAACCAGAGAAGAAAATTCCTTCAACAGCAGCAAAAG 29 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTT 13829 | || || ||| ||||| ||||| || Sbjct 28 CAGCTACTCTTTCACCAAATGATGCATT 1 >seq326921 Length=5948 Score = 98.7 bits (108), Expect = 9e-16 Identities = 198/288 (69%), Gaps = 22/288 (8%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 ||| ||||||||| |||| | || ||||| || || || || ||||||||||| || | Sbjct 5108 AATATATGTATCATTAAGAAGACTGTACATCTCTGAATGAATATTTTCTATAGC-ATTTT 5050 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAA 14048 ||||| | || || | || | |||| || | || || |||| | || Sbjct 5049 AAAACGCACTGTGCTTCAAGAATTTGTACTTTGT------GAATGAA-TCGTTCTACTAA 4997 Query 14049 GTTTT-CATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14107 |||| || | || || |||||||||||||||||||||| || |||| |||||| || | Sbjct 4996 ATTTTTCACTCACTATTCCATCACTAGCTGCAAAAAATGTTAAAATGTATTTAATGAAAT 4937 Query 14108 ATTGCTCTTCATTG---TTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 | || ||||||| | |||| || ||||| | | ||| | ||| |||| Sbjct 4936 A---CTGTTCATTGACCGTAAGTTGTTCCCAAT--GATTTTTCC-----CAAATCAACTT 4887 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATA 14212 | || || |||||||| ||| |||||||| |||||||| ||||| Sbjct 4886 CTTCTACAGTCCAAAAGAAAGCAACAGCTTTCTTATACATGGTCCATA 4839 >seq438317 Length=14545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/201 (71%), Gaps = 10/201 (5%) Strand=Plus/Plus Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109 |||||||||||||||||||||||||| |||||||| || || | | | || | | Sbjct 3419 TTTTCATTAACAATACCATCACTAGCAGCAAAAAAGGC---TAGGATATGCGAAATGAAA 3475 Query 14110 TGCTCTTCATTGTTGAGTTT--TTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 ||| ||| ||| || ||| ||| ||| || |||||||| || || ||||| |||| Sbjct 3476 TGCCTTTC--TGTAGATTTTAATTTCCCCCAGTCAGCTAAATCTTTTGAGAGATCCACTT 3533 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14224 | ||| | |||||||| || | || || || |||||| ||| || || ||| Sbjct 3534 CTTCAGCAGTCCAAAATGATGCTTCTGCCTTCTTGTACATTTGCCAAATATCAGGATACT 3593 Query 14225 ATATAGGAAAAACTACAAATC 14245 || || |||| |||||||| Sbjct 3594 CGATGGGGAAAATTACAAATC 3614 >seq2861173 Length=269 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 56424 TATAGATGAAGGGCAATTTTTTAAAGATATTGTACCTTTTTCTGAAAATATGGCAAATAT 56483 ||||||||||| || |||||| ||| || || | ||| ||||| | ||||| ||| Sbjct 269 TATAGATGAAGCACAGTTTTTTCCAGACATCGTGACGTTTGCTGAAGAAATGGCCAATCA 210 Query 56484 GGGAAAGATAATTATAATAGCTGCACTAGATAGCACGTTTCAACGAAAAGAATTTAATGA 56543 ||||| || ||||| || || ||| | | || |||| | |||||| || | Sbjct 209 AGGAAAAATTATTATTATTGCCTGTCTAAACGGAACTTTTCGAAGAAAAGCTTTCGGAAA 150 Query 56544 TATATTGAAATTGATACCGTTATCTGAAAAAGTAACAAAATTAAACGCTGTATGTATGGA 56603 ||| || | || || |||||| | ||||| || ||||||| | ||||| |||||| Sbjct 149 TATTTTACATTTAATTCCGTTAGCCGAAAACGTGGTAAAATTACATGCTGTTTGTATGTC 90 Query 56604 ATGTTATAAAGATGCCGCATTT 56625 |||| | |||| || ||||| Sbjct 89 GTGTTTTCAAGAAGCTTCATTT 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448757313183000