Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthoscurria_20geniculata_20[genbank_20GCA_5F000661875.1_202014- 04-29] 4,986,575 sequences; 7,178,402,394 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq780981 98.7 8e-16 seq2861173 96.9 3e-15 seq17242 95.1 1e-14 seq314876 91.5 1e-13 seq438317 87.8 1e-12 seq28755 86.0 5e-12 >seq780981 Length=1727 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||| ||||| || || || || || || ||||| |||||||| |||| ||| ||| Sbjct 146 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCTGGCATAAGTCCTCTTTTCTTA 87 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||||||||| | ||||| ||||| || || || ||||||||||| || ||||| || Sbjct 86 AGCCAAAATATTGATGCAAAGGAACCAGAGAAGAAAATTCCTTCAACAGCAGCAAAAGC- 28 Query 13295 ATCAAC-CTTTCACCA 13309 | | || ||||||||| Sbjct 27 AGCTACTCTTTCACCA 12 >seq2861173 Length=269 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/180 (74%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 52628 ATAGACGAGGGACAGTTTTTTCCAGATATCGTTGAATTTTG-TGATTATATGGCGAA-CA 52685 ||||| || | ||||||||||||||| |||| ||| |||| ||| | ||||| || || Sbjct 268 ATAGATGAAGCACAGTTTTTTCCAGACATCG-TGACGTTTGCTGAAGAAATGGCCAATCA 210 Query 52686 ATGGAAAAATATTAATAGTTGCAGCTCTTGACGGTACATTTTTAAGACAACCATTTGGAA 52745 | | |||| ||||| || |||| ||| |||| || ||| |||| || | || |||| Sbjct 209 AGGAAAAATTATTATTA-TTGCCTGTCTAAACGGAACTTTTCGAAGAAAAGCTTTCGGAA 151 Query 52746 ATATATTAAATTTAATACCGCGTGCAGAATACGTTTTAAAGCTTACA-GCTGTCTGCATG 52804 |||| ||| ||||||| ||| || ||| |||| |||| ||||| ||||| || ||| Sbjct 150 ATATTTTACATTTAATTCCGTTAGCCGAAAACGTGGTAAA-ATTACATGCTGTTTGTATG 92 >seq17242 Length=2525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 13177 ATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAAT 13236 ||| ||||| || || || || || || ||||| |||||||| |||| ||| |||| Sbjct 2214 ATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCTGGCATAAGTCCTCTTTTCTTAAG 2155 Query 13237 CCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTAT 13296 ||||||||| | ||||| ||||| || || || ||||||||||| || ||||| || | Sbjct 2154 CCAAAATATTGACGCAAAGGAACCAGAGAAGAAAATTCCTTCAACAGCAGCAAAAGC-AG 2096 Query 13297 CAAC-CTTTCACCA 13309 | || ||||||||| Sbjct 2095 CTACTCTTTCACCA 2082 >seq314876 Length=46846 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 52616 GATGTTATAGGGATAGACGAGGGACAGTTTTTTCCAGATATCGTTGAATTTTG-TGATTA 52674 ||| | || || |||||||| | ||||||||||||||| |||| ||| |||| ||| | Sbjct 32824 GATATCATCGGTATAGACGAAGCACAGTTTTTTCCAGACATCG-TGACGTTTGCTGAAGA 32882 Query 52675 TATGGCGAACAATGGAAAAATATTAATAGTTGCAGCTCTTGACGGTACATTTTTAAGACA 52734 ||||| || | ||||||||| | || |||| | | ||||| || ||| |||| | Sbjct 32883 AATGGCCAATCAAGGAAAAATAATTATCATTGCCTGTTTAGACGGAACTTTTCGAAGAGA 32942 Query 52735 ACCATTTGGAAATATATTAAATTTAATACCGCGTGCAGAATACGTTTTAAAGCTTACA-G 52793 | | || |||||||| || ||||||| ||| || ||| ||| |||| ||| | | Sbjct 32943 AGCTTTCGGAAATATCTTGCATTTAATTCCGTTAGCCGAAAGCGTGGTAAA-ATTATATG 33001 Query 52794 CTGTCT 52799 |||||| Sbjct 33002 CTGTCT 33007 >seq438317 Length=14545 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 13541 TTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAAT-AAAt-- 13597 ||||| ||||| || || ||||||||||||||||| || || || ||| ||| |||| Sbjct 3419 TTTTCATTAACAATACCATCACTAGCAGCAAAAAAGGCTAGGATATGCGAAATGAAATGC 3478 Query 13598 -tttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTC 13656 ||| | | | ||| || || ||| || | ||||||||||| | ||| || || Sbjct 3479 CTTTCTGTAGATTTT----AATTTCCCCCAGTCAGCTAAATCTTTTGAGAGATCCACTTC 3534 Query 13657 CTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAAC 13716 ||| | |||||||| || || | |||||||| ||||| ||| ||||| ||| | Sbjct 3535 TTCAGCAGTCCAAAATGATGCTTCTGCCTTCTTGTACATTTGCCAAATATCAGGATACTC 3594 Query 13717 AATGGGAAA 13725 ||||| || Sbjct 3595 GATGGGGAA 3603 >seq28755 Length=37593 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 52602 ACGATATTAATGCAGATGTTATAGGGATAGACGAGGGACAGTTTTTTCCAGATATCGTTG 52661 ||| ||| ||| ||| |||| || |||||||| | ||||||||||||||| || || Sbjct 15871 ACGTTATGAATTATGATATTATCGGTATAGACGAAGCACAGTTTTTTCCAGACATTGTAA 15812 Query 52662 AATTTTGTGATTATATGGCGAACAATGGAAAAATATTAATAGTTGCAGCTCTTGACGGTA 52721 ||| || | ||||| || | ||||||||| | || |||| ||| | || | Sbjct 15811 CGTTTGCAGAAGAAATGGCCAATCAAGGAAAAATAATTATCATTGCCTGTCTAAATGGAA 15752 Query 52722 CATTTTTAAGACAACCATTTGGAAATATATTAAATTTAATACCGCGTGCAGAATACGTTT 52781 ||||| |||| || | || |||||||| || ||| |||| || || ||| ||| Sbjct 15751 CATTTCGAAGAGAAGCTTTCGGAAATATCTTGAATCTAATTCCATTAGCCGAAAGCGTGG 15692 Query 52782 TAAAGCTTACA-GCTGTCTGCATG 52804 |||| ||| | |||||||| ||| Sbjct 15691 TAAA-ATTATATGCTGTCTGTATG 15669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404789926128150