Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthoscurria_20geniculata_20[genbank_20GCA_5F000661875.1_202014- 04-29] 4,986,575 sequences; 7,178,402,394 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq215054 107 2e-18 seq2361161 102 8e-17 seq3343411 100 3e-16 seq247341 89.7 5e-13 seq2535487 84.2 2e-11 >seq215054 Length=1089 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| || || ||| | || || || | | Sbjct 838 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAAGTGGAACCTAGT 779 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| ||||||| || ||||| || |||||| | || ||| Sbjct 778 GACACAATTGAAAATGTAAAAGCTAAAATCCAAGATAAAGAAGGCATTCCCCCTGATCAA 719 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | |||||||||||||| || || | || |||||| ||||| ||| Sbjct 718 CAGAGGCTTATATTTGCGGGCAAACAGCTAGAGGATGGACGTACCCTCTCAGACTATAAC 659 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||||||| | || || ||| |||| Sbjct 658 ATCCAAAAGGAATCAACACTTCATCTGGT 630 >seq2361161 Length=242 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| ||||| || || ||||| |||||||| | || || || | | |||| | Sbjct 1 TTCGTCAAAACACTAACTGGCAAGACCATCACACTTGAGGTGGAACCAAGTGACACGATA 60 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 ||| | |||| ||||||| || ||||| || ||||| | ||||| ||| |||| Sbjct 61 GAAAATGTGAAAGCCAAAATCCAGGATAAAGAAGGCATTCCACCAGACCAGCAGAGGCTG 120 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || |||||||||||||| || | |||||| | || |||| |||||| ||| Sbjct 121 ATATTTGCTGGCAAACAGCTGGAAGATGGACGCACCTTGTCTGATTACAGCATCCAGAAG 180 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCG 38458 || | || || |||||||| || || Sbjct 181 GAGTCTACTCTACATTTGGTTCTTCG 206 >seq3343411 Length=310 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 || || || || || || || || ||||| ||| | || || || | | |||| | Sbjct 309 TTTGTGAAGACTCTAACTGGTAAGACCATTACCCTTGAAGTGGAACCTAGTGACACGATA 250 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 ||| | |||| ||||||| || ||||| || |||||| | || || ||| |||| Sbjct 249 GAAAATGTAAAAGCTAAAATCCAAGATAAAGAAGGCATTCCCCCAGATCAGCAGAGGCTT 190 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||||||||| || || | ||||||||| ||||| |||||||||||| Sbjct 189 ATATTTGCAGGCAAACAGCTAGAGGATGGACGCACCCTCTCAGACTATAACATCCAAAAG 130 Query 38433 GAAGCGACGCTGCATTTGGT 38452 ||| | || || ||| |||| Sbjct 129 GAATCAACACTTCATCTGGT 110 >seq247341 Length=25763 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 9/142 (6%) Strand=Plus/Minus Query 132548 ACTAAAAGTCCGCATCCAAAGTAAAGGTGTCGTC------CTTGGCAAACATCACGCCAA 132601 |||||||||| ||||||||||||||| || ||| |||||| ||| || ||| Sbjct 16443 ACTAAAAGTCAGCATCCAAAGTAAAGCAGTGGTCTTCCTTCTTGGC---CATTACTCCAC 16387 Query 132602 ATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGA 132661 | ||||||||||| | || || || || ||||| |||||||||||||||| ||| Sbjct 16386 ACTTTTGATATTCTGCAACTTTCTTTTCGAAAAAGTTAGTTTTTCCCTCCAGACTGATGT 16327 Query 132662 GCGTCATAAAATCCAAGGGGTT 132683 | ||||||||| || || || Sbjct 16326 GATCCATAAAATCAAATGGATT 16305 >seq2535487 Length=251 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 38342 AGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGA 38401 ||| || ||||| | || || ||| |||| || | || ||||||||||| || || | Sbjct 1 AGAAGGCATTCCTCCAGATCAGCAGAGGCTTATATTTGCAGGCAAACAGCTAGAGGATGG 60 Query 38402 GCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||| ||| ||||| |||||||||||||| ||||||||||| |||| Sbjct 61 CCGCACTCTCTCAGACTATAACATCCAAAAGGAGTCGACGCTGCATCTGGT 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468995935248000