Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthoscurria_20geniculata_20[genbank_20GCA_5F000661875.1_202014- 04-29] 4,986,575 sequences; 7,178,402,394 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq438317 109 4e-19 seq326921 82.4 6e-11 >seq438317 Length=14545 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | || || || | |||| ||| || |||||||||||||| || ||| | || Sbjct 3612 TTTGTAATTTTCCCCATCGAGTATCCTGATATTTGGCAAATGTACAAGAAGGCAGAAGCA 3553 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 ||||||||||| || |||||||| ||| | | ||||| ||||| | ||| |||| Sbjct 3552 TCATTTTGGACTGCTGAAGAAGTGGATCTCTCAAAAGATTTAGCTGACTGGGGGAAATTA 3493 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 ||| | ||||| ||||| || || | | || ||||||||||| || || || Sbjct 3492 AAATCTACAGAAAGGCATTTCATTTCGCATATCCTAGCCTTTTTTGCTGCTAGTGATGGT 3433 Query 43880 ATAGTCAATGAAAATTTGGT 43899 || || ||||||||| |||| Sbjct 3432 ATTGTTAATGAAAATCTGGT 3413 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 43905 GGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 ||||||| || |||||||| | ||||||| || || || ||||| ||||| ||||| | Sbjct 999 GGTTTGCCCAGGAAGTTCAGGTCACAGAAGCCCGCTGCTTCTATGGATTTCAGATTGCAA 940 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 | |||||| | || || |||||||||||||| || || || || ||| | || ||| Sbjct 939 TTGAAAATGTCCACTCTGAAATGTACAGTCTGCTAATTGACACATACGTAAAGGAT 884 >seq326921 Length=5948 Score = 82.4 bits (90), Expect = 6e-11 Identities = 233/350 (67%), Gaps = 31/350 (9%) Strand=Plus/Plus Query 43851 TTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT-CGGTTT 43909 |||| | |||||||| || || || || ||||| | |||||| || ||| || || Sbjct 4952 TTTTAACATTTTTTGCAGCTAGTGATGGAATAGTGAGTGAAAAATTTAGTAGAACGATTC 5011 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 || |||| ||| | | ||||||| || |||| ||| ||| |||||| Sbjct 5012 ATTCACAAAGTACAAATTCTTGAAGCACAGTGC--------GTTTTAAAATGCTATAGAA 5063 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 ||||||||||| || |||||||||||||| | ||||| || || |||| || Sbjct 5064 AATATTCATTCAGAGATGTACAGTCTTCTTAATGATACATATATTCGAGATAAAGTCGTA 5123 Query 44030 AAGCATCGATT--GTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGAC 44086 || || | || |||||||| ||||||| | || | || | |||| ||||||| Sbjct 5124 AA--ATTGTTTTCATTTAATGCCGTAGAAACGTTGCCGTACG-TAAAACGAAAAGCAGCA 5180 Query 44087 TGGGCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCG-CGTT 44142 ||| | || ||||| || | |||| ||| |||| |||| | || || | || Sbjct 5181 TGGACATTTCGTTGGATTCATGATACCAATGCTTCATTTGAAGAAAGCCTAGTGGATTTT 5240 Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTT 44192 ||||||| ||||| |||| ||||| |||||||| || |||| Sbjct 5241 TGCAGTT---GAAGG-ATTT--------GGATCCTTTGCGGCAATTTTTT 5278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 373301055632875