Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthoscurria_20geniculata_20[genbank_20GCA_5F000661875.1_202014- 04-29] 4,986,575 sequences; 7,178,402,394 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq438317 114 1e-20 seq326921 107 2e-18 seq4967570 91.5 1e-13 seq17242 84.2 2e-11 >seq438317 Length=14545 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 ||||| || || ||||| ||||| || |||||||| || | | ||| || || || | | Sbjct 3419 TTTTCATTAACAATACCATCACTAGCAGCAAAAAAGGCTAGGATATGCGAAATGAAATGC 3478 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCA 5057 ||| || || | ||| ||||| | |||||||| | | ||| ||||||||| Sbjct 3479 CTTTCTGTAGATTTTAATTTCCCCCAGTCAGCTAAATCTTTTGAGAGATCCACTTCTTCA 3538 Query 5058 ACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATC 5117 |||||||||| || ||||| || || |||||||| ||||||||||||||||| || Sbjct 3539 GCAGTCCAAAATGATGCTTCTGCCTTCTTGTACATTTGCCAAATATCAGGATACTCGATG 3598 Query 5118 GGAAGTATGACAAATC 5133 || | || ||||||| Sbjct 3599 GGGAAAATTACAAATC 3614 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 4821 TAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAAT 4880 || ||||| ||||| || || ||||||||||| || | |||||| || |||||||||||| Sbjct 894 TATGTGTCAATTAGCAGACTGTACATTTCAGAGTGGACATTTTCAATTGCAATCTGAAAT 953 Query 4881 CCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTAC 4933 || || ||||| | |||||||| || |||||||| | ||| ||||| || Sbjct 954 CCATAGAAGCAGCGGGCTTCTGTGACCTGAACTTCCTGGGCAAACCTTTCCAC 1006 >seq326921 Length=5948 Score = 107 bits (118), Expect = 2e-18 Identities = 201/294 (68%), Gaps = 16/294 (5%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 ||| ||||||| || || | || || || ||||| || ||||| ||||||||||||||| Sbjct 5113 TCTCGAATATATGTATCATTAAGAAGACTGTACATCTCTGAATGAATATTTTCTATAGCA 5054 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 | | ||| ||| ||||| | ||| |||| || | |||| |||| Sbjct 5053 TTTT--------AAAACGCACTGTGCTTCAAGAATTTGTACTTTGTGAATGAATCGTTCT 5002 Query 4932 ACT-AAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| | ||||| || ||||| ||||||||||| | |||| | || Sbjct 5001 ACTAAATTTTTCACTCACTATTCCATCACTAGCTGCAAAAAATGTTAAAATGTATTTAAT 4942 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||||||| | | |||||| || ||| || || ||| |||||||| Sbjct 4941 GAAATACTGTTCATTGACCGTAAGTTGTTCCCAATG------AT-TTTTCCCAAATCAAC 4889 Query 5051 TTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104 |||||| ||||||||||| | || | ||||| || ||||| | ||| | ||| Sbjct 4888 TTCTTCTACAGTCCAAAAGAAAGCAACAGCTTTCTTATACATGGTCCATAAATC 4835 >seq4967570 Length=1741 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 ||||| | || ||||| |||||||| || ||||| |||| || | | ||| || ||| Sbjct 1381 ACAAGAAGGCGATCAGCAACAAATTCAATGTACTGATTCATAAGAGCACTGTTCATGCCA 1440 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 || | ||||||| || | |||| |||||| ||||| || | || || |||| Sbjct 1441 ATCAGAGCAACAGGTAATGCATCAGTCAGAAACTCCTGTTCAATTGCAACAGCATCTGAT 1500 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 || || | ||||| | || | |||||||||||| |||| || | |||| | || Sbjct 1501 ATAATCTGAATTATTCTCTCCTGAGATGGTTTATTGACTAGGTGACTGAACATCAGGCAG 1560 Query 4551 GCAAAATCACAATGCAAACC 4570 ||||| |||||||| | ||| Sbjct 1561 GCAAAGTCACAATGAAGACC 1580 >seq17242 Length=2525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/189 (70%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 4575 TCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGC 4634 || || || || ||||| ||| || || | || ||||| | ||||| || |||||| Sbjct 2213 TCCCTACTGATAAGTTCATTACTGAAGGTAAGACCTGGCATAAGTCCTCTTTTCTTAAGC 2154 Query 4635 CAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACT 4694 |||||||| | ||||| || ||||| ||||| || ||||| || || ||||| || || Sbjct 2153 CAAAATATTGACGCAAAGGAACCAGAGAAGAAAATTCCTTCAACAGCAGCAAAAGCAGCT 2094 Query 4695 AATCGGGACCCGAACGAGCTGGCTT--TGTCTTTAATCCATTTTAATGCCCAGTTAGCTT 4752 | || || || || || || ||| |||||||| || || ||||| ||| | Sbjct 2093 ACTCTTTCACCAAATGA--TGCATTAGTGTGATTAATCCAGTTCAAAGCCCAAACAGCCT 2036 Query 4753 TTTTCTTAA 4761 | ||||||| Sbjct 2035 TCTTCTTAA 2027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401096137654475