Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_000935.1 Length=36524 Score E Sequences producing significant alignments: (Bits) Value seq11454 306 9e-79 seq39681 246 7e-61 seq55895 150 4e-32 seq54647 86.0 1e-12 seq44072 80.6 6e-11 >seq11454 Length=2477 Score = 306 bits (338), Expect = 9e-79 Identities = 420/571 (74%), Gaps = 22/571 (4%) Strand=Plus/Minus Query 27703 TTGCTTATCAAGGATATCCAGCACCCATTTTCTGAATTCTTTTGCTACTGGTGTACGGGA 27762 |||| ||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| | Sbjct 1982 TTGCCGATCGAGGATATCCAGTATCCATATTCTAAATTCCTTTGCTACTGGCGTACGAGC 1923 Query 27763 AAATATGGCGATTAAGTGTGCCCCACGTAGAGAAAAAATTCTTGTTTTG---TTACGAGA 27819 || ||| ||||||| || || || || || || || |||| || || || |||| Sbjct 1922 AAGCATGCCGATTAAATGGGCACCGCGGAGGGAGAAGATTCGGGTCCTGGCCTT--GAGA 1865 Query 27820 TTTTCCTAAGGTCGTCGAATCAACGACCTTGGACATATGATCCGCGAATTCATCAGAATT 27879 || || | ||| |||| || | ||| |||||||| ||| | ||||| ||||| | Sbjct 1864 TTCCCCGA-GGTACTCGATTCGAGTACCGTGGACATAGCATCTGTAAATTCCTCAGAGTA 1806 Query 27880 TTTGTGATAAAGATCGGTAACGGATTTACTGCTGGAGTATTGTAATGCCTTAGCAAGCAC 27939 | || ||||| ||||||| || | || ||||| | || || || || | Sbjct 1805 CTGGTTATAAATCATAGTAACGGCCTTGGGATTTGAATATTGCAGCGCTTTTGCTAGTTC 1746 Query 27940 -GCTAGACGTAAACCAAATCTGCCCATTATGAGATATGGTTTCAAGAACAGTATTGCGGA 27998 ||| || || ||||| || || |||||||| | || ||||||| ||||||||||| Sbjct 1745 AGCT-GAAGTGAACCAGATTTGGCCATTATGGTAGATAATTTCAAGCTGAGTATTGCGGA 1687 Query 27999 AAACTAAAGTAGTCATAGTAATGATTTCCTTGTTAG--TTAAGGATAATCACCACCTTTG 28056 || ||| || ||||||| |||| |||| ||| || ||||||||| ||||| | Sbjct 1686 AAGTTAACGTTGTCATAGC---GATTCCCTTTGTAGCTTTTAGGATAATCGCCACCAA-G 1631 Query 28057 AGGTCTCAAACTCATA--TTGGCGGTGAACTGAACAGGGTTGAGACTACCGGCTAACAAG 28114 |||| |||| ||| | |||| || |||||||||||||||| ||||||||||| ||| Sbjct 1630 AGGTGTCAAGCTCTAAATTTGGTGGCAAACTGAACAGGGTTGACACTACCGGCTACAAAG 1571 Query 28115 GACCCAGCGAGCCTTTCGGCTCCCCCATCCAGCCCACCATTGATTTTTGATATGGCA-GC 28173 ||||| || | |||| ||| | ||||||||||| |||||||| || ||| |||| | Sbjct 1570 GACCCGGCCAACCTTACGGTTGCCCCATCCAGCTCACCATTG--TTCCGAT-GGGCAGGA 1514 Query 28174 CTGACGCATaaaaaaaaCACGCTTACTGCGTGCTATGCGCCTTGTTAGCTAATACGGGGT 28233 || | ||| ||||||||||||| | |||||||||||||||| ||| | | |||||| Sbjct 1513 CTCATGCA-CAAAAAAACACGCTCTCGGCGTGCTATGCGCCTTTGTAGAT-ACCCGGGGT 1456 Query 28234 CTCAAACCCGACACCTGATTTTGCAGATGCA 28264 |||| ||||||| ||||||||||||||||| Sbjct 1455 GTCAAGCCCGACATCTGATTTTGCAGATGCA 1425 >seq39681 Length=3370 Score = 246 bits (272), Expect = 7e-61 Identities = 443/630 (70%), Gaps = 37/630 (6%) Strand=Plus/Minus Query 27703 TTGCTTATCAAGGATATCCAGCACCCATTTTCTGAATTCTTTTGCTACTGGTGTACGGGA 27762 |||| |||| |||||||| |||||||| | ||||||||||| || || |||| |||| Sbjct 2740 TTGCCTATCCAGGATATCTAGCACCCACTGCCTGAATTCTTTCGCAACAAGTGTGCGGGC 2681 Query 27763 AAATATGGCGATTAAGTGTGCCCCACGTAGAGAAAAAATTCTTGTTTT-GTTACGAGATT 27821 ||| || ||||| | || || || || || || |||| || |||| ||| | ||| Sbjct 2680 AAACATAGCGATAAGATGAGCACCGCGGAGGGAGAAAAGTCGAGTTTCAGTTTGTAAATT 2621 Query 27822 TTCCTAAGG--------TCGTCGAA----TCAA-----CGACCTTGGACATA--TGATCC 27862 || |||| ||||||| |||| | ||| ||||||| || | Sbjct 2620 ATCGTAAGTCGTTGATTTCGTCGAGGGGGTCAAATTGACCACCCGGGACATACCTGGTAA 2561 Query 27863 GCGAATTCATCAGAATTTTTGTGATAAAGATCGGTAACGGATTTACTG-CTGGAGTATTG 27921 ||||| | ||| | | ||||| | | |||| | ||| | ||| | |||| Sbjct 2560 A--AATTCTTTAGAGTGACGGGCATAAATACGGTTAACTGCTTTGTCGTCTGTA-TATTC 2504 Query 27922 TAATGCCTTAGCAAGCAC-GCTAGACGTAAACCAAATCTGCCCATTATGAGATATGGTTT 27980 | || || || | | ||| || || | |||||| | ||||| || || || |||| Sbjct 2503 AAGCGCTTTTGCTAATTCAGCT-GAAGTGAGCCAAATTTCGCCATTGTGGGAGATAGTTT 2445 Query 27981 CAAGAACAGTATTGCGGAAAACTAAAGTAGTCATAGTAATGATTTCCTTGTTAGTTAAGG 28040 |||| | ||||||||||| ||| || |||||||| ||| |||| |||||| | | Sbjct 2444 CAAGCTCGATATTGCGGAAAGTTAACGTTGTCATAGTGATG--TTCCCTGTTAGATTGGA 2387 Query 28041 ATAATCACCACCTTTGAGGTCTCAAACTCATATTGGCGGTGAACTGAACAGGGTTGAGAC 28100 | ||||||| | | ||||| || |||| |||||||| ||||||||||||||| || Sbjct 2386 AGAATCACCGC--TAGAGGTTCTAATCTCA-ATTGGCGGCGAACTGAACAGGGTTAGAAC 2330 Query 28101 TACCGGCTAACAAGGACCCAGCGAGCCTTTCGGCTCCCCCATCCAGCCCACCATTGATTT 28160 ||||||||||||||||||| || | |||| ||| | ||||||||||| |||||||| || Sbjct 2329 TACCGGCTAACAAGGACCCGGCCAACCTTACGGTTGCCCCATCCAGCTCACCATTG--TT 2272 Query 28161 TTGATATG-GCAGCCTGACGCATaaaaaaaaCACGCTTACTGCGTGCTATGCGCCTTGTT 28219 |||| | | | ||| ||||| |||||||||||| | ||||| ||||||| |||| Sbjct 2271 CTGATGGGCGAGGACTG-CGCAT-AAAAAAACACGCGGTCGGCGTGTCATGCGCCCTGTT 2214 Query 28220 AGCTAATACGGGGTCTCAAACCCGACACCTGATTTTGCAGATGCAAATAAACTATAGCGC 28279 || | | |||||| || ||||||| ||||||||||||||||| || |||| | Sbjct 2213 AGAT-ACCCGGGGTTCTAATCCCGACATCTGATTTTGCAGATGCAGCACAAATATAATCC 2155 Query 28280 ATGATTTCTTCTTTCGTCAATAAGTTAATT 28309 | | || || ||||||||||| ||||| Sbjct 2154 ACAGTGGCTCCTGTCGTCAATAAGGTAATT 2125 >seq55895 Length=771 Score = 150 bits (166), Expect = 4e-32 Identities = 252/348 (72%), Gaps = 20/348 (6%) Strand=Plus/Plus Query 27970 AGATATGGTTTCAAGAACAGTATTGCGGAAAACTAAAGTAGTCATAGTAATGATTTCCTT 28029 ||| |||| ||| || ||||||||||||| ||| || |||||||| || | | || Sbjct 285 AGAGATGGCTTCGAGCTTAGTATTGCGGAAAGTTAACGTTGTCATAGTGATTCTCTTCTA 344 Query 28030 GTTAGTTAAGGATAATCACCACCTTTGAG-GTCTCAAA-CTCATATTGGC-GGTGAACTG 28086 | | ||| |||||||||||||| ||| | | | || ||| | | || ||||||| | Sbjct 345 GCTTTTTA-GGATAATCACCACC---GAGAGACGCTAATCTCTTTTGGGGTGGTGAACCG 400 Query 28087 AACAGGGTTGAGACTACCGGCTAACAAGGA-CCCAGCGAGCCTTT-CGGCTCCCCCATCC 28144 ||| | ||| ||||||||| ||||| ||| || | ||||| ||| | |||||||| Sbjct 401 AACGGAGTTAGCGTTACCGGCTAGAAAGGAACCCGGCCAACCTTTACGGTTGCCCCATCC 460 Query 28145 AGCCCACCATTGATTTTTGATATGGCA--GCCTGACGCATaaaaaaaaCACGCTTACTGC 28202 ||| |||||||| || |||| | || | ||| ||||||||||| |||||| | || Sbjct 461 AGCTCACCATTG--TTCTGATG-GACAAGGACTG-CGCATAAAAAA--CACGCTCTCGGC 514 Query 28203 GTGCTATGCGCCTTGTTAGCTAATACGGGGTCTCAAAC-CCGACACCTGATTTTGCAGAT 28261 |||||||||||||| ||| | | || | | || ||||||||||||||||||||| Sbjct 515 GTGCTATGCGCCTTTCTAGACAC--CCGGAACGCTAATTCCGACACCTGATTTTGCAGAT 572 Query 28262 GCAAATAAACTATAGCGCATGATTTCTTCTTTCGTCAATAAGTTAATT 28309 |||| | |||| || | || |||||||||||| | ||||| Sbjct 573 GCAACACGAATATAATCCACAGTGGCTCCTTTCGTCAATAGGGTAATT 620 >seq54647 Length=1020 Score = 86.0 bits (94), Expect = 1e-12 Identities = 164/234 (70%), Gaps = 31/234 (13%) Strand=Plus/Minus Query 28042 TAATCACCACCTTTGAGGTCTCAAACTC-ATATTGGCGGTGAACTGAACAGGGTTGAGAC 28100 || ||||||||| ||||| |||||| | ||||| ||||||||||| |||||| || Sbjct 231 TACTCACCACCTA-GAGGTTCGAAACTCTACATTGGTGGTGAACTGAAGAGGGTTCGAAC 173 Query 28101 TACCGGCTA-ACAAGGACCCAGCGAGCCTTTCGGCTCCCCCATCCAGCCCACCATTGATT 28159 |||||| || || | || | | |||| ||||| |||||||||||||||||| Sbjct 172 TACCGGATACACCA----CCGGTCAACCTTGCGGCTGCCCCATCCAGCCCACCAT----- 122 Query 28160 TTTGATATGGCAGCCTGACGC-AT--aaaaaaaaCACGCTTACTGCGTGCTAT------G 28210 || ||| | || || || | |||||||||||| | ||||| ||| | Sbjct 121 -----TAAGGC--GCGGATGCTATCAACAAAAAACACGCTCGCGGCGTG-TATTCATTGG 70 Query 28211 CGCCTTGTTAGCTAATACGGGGTCTCAAACCCGACACCTGATTTTGCAGATGCA 28264 ||| ||| | | ||||| |||||||||| ||||||||||||||||| Sbjct 69 CGCGGTGT--ATTCAGCGGGGGTTCGAAACCCGACATCTGATTTTGCAGATGCA 18 >seq44072 Length=2018 Score = 80.6 bits (88), Expect = 6e-11 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 32284 ACTAGAAAGTGCTGGTATTTCTAGAGAAAAGGCTAGAGCTATCTCACTGGTAGTACGCAA 32343 ||| ||| | | || |||||| |||| | |||||||| || || | | |||| | Sbjct 1056 ACTTGAATCTTCAGGAATTTCTGCAGAACAAGCTAGAGCCATTTCTATTGCTGTACTTGA 997 Query 32344 ATCGCATGACGTTGCTAATGTAGCGACTAAAGCGGATATTGCAGAAGTTAAGCGTGATAT 32403 | | || | | | | ||||||| || |||| |||||||| ||||| || |||||||| Sbjct 996 AGCTCACAAAGCAGTTGATGTAGCAACAAAAGGTGATATTGCTGAAGTAAAACGTGATAT 937 Query 32404 TGCTGATGTTCGTA 32417 |||||||||||||| Sbjct 936 TGCTGATGTTCGTA 923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116677079460540