Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11840 217 2e-51 seq4930 113 5e-20 seq43315 91.5 2e-13 >seq11840 Length=1854 Score = 217 bits (240), Expect = 2e-51 Identities = 452/674 (67%), Gaps = 24/674 (4%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||| ||||| || | |||| || | || |||||||| || || || || | Sbjct 726 ACCTGAAACTCTCCGGAGAGGACTCGACGGGAATATATATTACTAGTGTAGGGCTCTATC 785 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||| || || || || || || || || || |||||||| || |||| | | | Sbjct 786 GACTCATTGTTGCCTAATATCTGTGCCGTAGAAGCGGTCGGCATCGGAGCCAACGTAAGA 845 Query 53270 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 53329 ||||| | | || ||| | ||| || || || || |||||||||| || || Sbjct 846 CTATTACGTACTCCATATTTGGCGATCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCA 905 Query 53330 GA-------CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGA 53382 | |||| | || ||| |||||||| ||| | | ||| Sbjct 906 GTTGGCGTTCGGTCCCACATATCGTA-------TTGAAGAATACCTTTAGAGACCGGCGA 958 Query 53383 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 53442 ||| ||||||| || || ||||| || | ||| | ||||||||| ||||| || || Sbjct 959 ACCTTCATATGTCTCATAAGGTCCCAACTCTTTAGCCAATTCACAACTGGCCTCCAAAGC 1018 Query 53443 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 53502 |||||||| ||||| || || |||| |||| || || ||||| | || ||||| Sbjct 1019 GCCGTAATATATGGTCTCAAAAATCTGGATATTAAGTCGTTTCGCTTCTGGACTTTCAAA 1078 Query 53503 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 53562 || | | | |||||||| ||| || || || ||||| ||||||||||| |||| Sbjct 1079 GGGCTGACGCATAAGAATAAAACAGTCGGCCAAACCCTGAACTCCAATACCGATGGGTCG 1138 Query 53563 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 53622 ||||||||||||||| || | ||| || | |||||| || |||| || || ||||| Sbjct 1139 GTGTCTCTTATTAGAGCGCTCTGTTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTT 1198 Query 53623 ATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TT 53678 |||||| ||||| || ||||| |||| || || ||||| |||||| || Sbjct 1199 ATTGAGATTTCTTGTGATAACTTTAGCCACTTCTTTGAGTTTCGCAAAATCGAAGGACAG 1258 Query 53679 GTCCATCT--ATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTC 53736 ||| | | | || || ||||| ||||| || |||| ||| || || || | ||| Sbjct 1259 CTCCCTTTTGTTGACGAATCGATTCAAAGCAATTGACGCCAAATTGCAGACTGCGATCTC 1318 Query 53737 A--TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 53794 | || | | || || | ||||| || ||||| | || ||||| |||||||| Sbjct 1319 ATCTTTGGA--CGAGTACTCAATTATTTCTGTGCATAAGTTCGAGCACTTAATGGTTCCC 1376 Query 53795 AAATTTTGTTGATT 53808 |||||||||||||| Sbjct 1377 AAATTTTGTTGATT 1390 Score = 100 bits (110), Expect = 3e-16 Identities = 175/252 (69%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 53911 TTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAAC 53970 ||| || |||||| |||| ||| | ||| ||||||||||| || || |||||| Sbjct 1548 TTTATACTTCTTTTGGTTTTCATATTTTTCATATAATCGTTCAAATTCTTCGCCCCAACA 1607 Query 53971 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 54030 | || | ||| ||||| || | |||||||||| |||||| | ||| ||| || Sbjct 1608 GTCGTGAAGTCCGGGACACTCGTGTGGACACATCAGTGACCACATTTGGTCTGCCTCTAC 1667 Query 54031 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAATAGATCTCTGGTTCTATGTT 54089 || |||||| || || ||||||||||| || || ||| |||||||||| ||| | | Sbjct 1668 GCGACGCATAAACAGGTCCGGAATCCAAAG-GCCATAAAACAGATCTCTGGCTCTTAGCT 1726 Query 54090 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 54149 | || ||| || || || | | ||| | |||| | | || | |||||||| | Sbjct 1727 CTTCTGATCCGGTGTTTTTCCTTAAATCTAAGAACTGGAACACGTCTGCGTGCCACGGCT 1786 Query 54150 CCAAGTATATGG 54161 ||| |||||||| Sbjct 1787 CCAGGTATATGG 1798 >seq4930 Length=2674 Score = 113 bits (124), Expect = 5e-20 Identities = 307/462 (66%), Gaps = 6/462 (1%) Strand=Plus/Plus Query 54449 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATA 54508 || ||||| || ||||| ||||| | || || || || ||||| || | ||| || Sbjct 1 GACGCGTGAGTGAACCACCGCTCAGACATCAGGTTATATGTTTCGATGGCAGCGTCGATG 60 Query 54509 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 54568 ||| ||||| || || | ||| | ||| | ||| || ||||||| ||| || || Sbjct 61 TCCTCCGCGTGAATACCGACGGAGACTCTCATCAGCATATGTTGAGGTCGTTCCACAATT 120 Query 54569 TTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA- 54627 ||| ||| ||||||| ||| || | | || || || ||||| ||||| || ||||| Sbjct 121 TTGCCGTTGATTTTCAACAAATAACTTCTCTCTAATGTCTTAAATCCAAAGTAATTGTAG 180 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTAC 54687 |||||| |||| || ||||| || | ||||| ||| ||| || ||| | || || Sbjct 181 TGAAAA-TCTCTGTCATAAATGATGGCAGAGTTTAGTCGTTCCGAATGTTTTTCAATCAC 239 Query 54688 ATCCATGGTAATACTTGAA-ATAATCGGAGAATGT-TTCCCATTTTTAGGATTGACATAG 54745 | || | | | | | || || || | | |||| | | | | ||| Sbjct 240 TTT-ATAGATCTGGTCGGAGATCATAGGCGTCGGCATTCCTGTCCTCTCGTTATGCATT- 297 Query 54746 TTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGAT 54805 | | | || || || || || ||| || ||||| || ||||||||||||||||| Sbjct 298 TCATACAAGTCTTTGATGACATCAGAGAAGTTCTTTTTGGTCTCTTTGTGTAGATTTGAG 357 Query 54806 ACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCT 54865 || ||||||| || || || | || ||||||| |||| ||| || ||||| ||| Sbjct 358 ACCACTATTCTGGCCGCGAGTTTCGCGTAATCCGCGTGTTTTGTGGTCATTGTGGCCGCT 417 Query 54866 ATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCA 54907 |||||||| | || ||||||| || || ||||||||| Sbjct 418 ATTTCGGCGGCCAATTCATCCAATTTGACAGTCGTTACTCCA 459 >seq43315 Length=222 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/137 (75%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 |||| |||| || || ||||||||||| |||||||| |||| |||| |||||| || Sbjct 61 TATAAAGTCA-AATACCGGGCCGTTTGTTCCCTCCCTGGTCTACATATCGAGCGGTATTG 119 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 |||||||||| | ||| |||| | ||||||||||| || || || |||| ||| || Sbjct 120 TTATAAACTCGAAGCATAGGAACCAAACCATTGGATGTGCCGTTAGTGCCGGCGATGTAA 179 Query 54275 CTTCCACTGGCACGAAT 54291 | || |||||||| Sbjct 180 GTGCCCGCCGCACGAAT 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593303434455600