Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq17432 109 5e-19 seq669 87.8 2e-12 >seq17432 Length=31749 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 ||||||||||| ||| | ||||| ||||| || |||||||||||| || ||| ||| Sbjct 23743 AAAATGCAAATTTTCGTGAAAACGTTGACCGGAAAAACCATTACCCTTGAGGTGGAGCCC 23802 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | | ||| || ||| || ||||| || | || || Sbjct 23803 TCCGACACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCCGAC 23862 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 ||||| ||||| |||||||||||||||||||| ||||| | ||| | |||||||| Sbjct 23863 CAACAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGCACTCTCTCCGATTAC 23922 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| || || ||||| |||| | || | ||||||| Sbjct 23923 AACATTCAAAAGGAGTCAACCCTTCATTTGGTACTCCGTCTGAGAGGAGG 23972 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| |||||| |||| || |||| || || || ||||| ||| ||| || | Sbjct 24137 AATGCAGATATTCGTCAAGACTCTGACCGGAAAGACAATTACTTTGGAAGTGGAGCCGTC 24196 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | ||| ||||| || ||||||||| | || ||||| Sbjct 24197 GGACACCATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGTATTCCTCCGGATCA 24256 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||||| |||||||||||||||||||| ||||| | ||| | | ||||| || Sbjct 24257 ACAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGAACACTCTCTGATTATAA 24316 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| ||||| || |||||||| |||| | || | ||||||| Sbjct 24317 TATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGG 24364 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||||||| ||||||||||||| || || ||||| || ||| ||| || | Sbjct 24593 AATGCAAATATTCGTCAAAACATTGACCGGAAAGACCATCACTTTGGAAGTGGAGCCGTC 24652 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | ||| |||||| || ||||| ||| | || ||||| Sbjct 24653 GGACACCATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGGTATTCCTCCGGATCA 24712 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | |||||||| || ||||||||||| ||||| | ||| | | || || || Sbjct 24713 ACAGCGTCTTATCTTCGCCGGCAAACAACTAGAAGACGGCCGAACACTCTCTGACTATAA 24772 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| ||||| || |||||||| |||| | || | ||||||| Sbjct 24773 TATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGG 24820 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||||||| | || |||||||| || || ||||| || ||| ||| || | Sbjct 24821 AATGCAAATATTCGTGAAGACATTGACCGGAAAGACCATCACTTTGGAAGTGGAGCCGTC 24880 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || ||| || |||||||| | || ||||| Sbjct 24881 GGACACCATCGAGAATGTAAAGGCTAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCA 24940 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || | ||||| || ||||||||||||||||| ||| | |||| ||||| Sbjct 24941 GCAACGATTGATCTTCGCTGGCAAACAACTGGAAGACGGGCGCACTCTTTCCGACTACAA 25000 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| ||||| || || ||||| ||||| | ||| | ||||||| Sbjct 25001 TATTCAAAAGGAGTCGACCCTTCATTTGGTGCTTCGACTCAGAGGAGG 25048 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || || |||| || |||||||| ||| || ||| ||| | Sbjct 24365 AATGCAAATCTTTGTTAAGACTCTGACCGGAAAAACCATAACCCTTGAGGTGGAGCCCTC 24424 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | ||||| ||||| ||||||||||| | || || || Sbjct 24425 CGACACCATTGAGAACGTTAAGGCCAAAATCCAAGATAAAGAAGGCATCCCTCCCGACCA 24484 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||||| ||||| || |||||||| ||||||| ||| | ||||||| || Sbjct 24485 ACAAAGACTGATCTTCGCCGGCAAACAGTTGGAAGACGGGCGCACTCTTTCCGATTATAA 24544 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||| || || ||||| |||| | || || ||||||| Sbjct 24545 CATTCAAAAGGAGTCGACCCTTCATTTGGTACTCCGTTTGAGAGGAGG 24592 >seq669 Length=42814 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| |||||| | || || | || || || |||||||| ||| ||| | | Sbjct 31842 AATGCAGATATTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGAAGTGGAGGCTTC 31783 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | ||| ||| ||| || || |||||| | || ||||| Sbjct 31782 GGATACCATCGAAAACGTGAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCGGATCA 31723 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||||||||||||||||||||||| | || || | ||| | | |||||||| Sbjct 31722 ACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACAA 31663 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| || ||||| || |||| | || || ||||||| Sbjct 31662 CATTCAGAAGGAGTCGACTCTCCATTTGGTTCTTCGTTTGAGAGGAGG 31615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428041859660975