Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq17432 143 3e-29 seq669 136 4e-27 seq214 120 3e-22 >seq17432 Length=31749 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| |||||| | || || |||||||| ||| | || || || || Sbjct 23743 AAAATGCAAATTTTCGTGAAAACGTTGACCGGAAAAACCATTACCCTTGAGGTGGAGCCC 23802 Query 40747 ACCGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | || |||| | |||| || |||| ||||||||||||||||| | || Sbjct 23803 TCCGACACCATTGAGAACG-TGAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCCGA 23861 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || |||| |||| ||||||||||| || || |||| ||||| ||| ||| || Sbjct 23862 CCAACAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGCACTCTCTCCGATTA 23921 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| || |||||| | || || ||| | || | || |||| || || Sbjct 23922 CAACATTCAAAAGGAGTCAACCCTTCATTTGGTACTCCGTCTGAGAGGAGG 23972 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||||||||| || || | || || || |||||||| | || || || | | Sbjct 24821 AATGCAAATATTCGTGAAGACATTGACCGGAAAGACCATCACTTTGGAAGTGGAGCCGTC 24880 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | | |||| || |||| |||||||| || || || |||| || Sbjct 24881 GGACACCATCGAGAATGTAAAGGCTAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCA 24940 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| ||| |||||||| ||||| |||| |||||| || ||||||||| Sbjct 24941 GCAACGATTGATCTTCGCTGGCAAACAACTGGAAGACGGGCGCACTCTTTCCGACTACAA 25000 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || || |||||| | || || ||| | ||| Sbjct 25001 TATTCAAAAGGAGTCGACCCTTCATTTGGTG 25031 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||||||||| ||||| | || || || |||||||| | || || || | | Sbjct 24593 AATGCAAATATTCGTCAAAACATTGACCGGAAAGACCATCACTTTGGAAGTGGAGCCGTC 24652 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || |||| | |||| ||||||| ||||||||||| || || |||| | Sbjct 24653 GGACACCATTGAGAACG-TGAAGGCGAAAATTCAGGACAAAGAGGGTATTCCTCCGGATC 24711 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || || |||| ||| |||||||| || || |||| || || ||| ||||| | Sbjct 24712 AACAGCGTCTTATCTTCGCCGGCAAACAACTAGAAGACGGCCGAACACTCTCTGACTATA 24771 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | || || |||||| | || || ||| | || | || |||| || || Sbjct 24772 ATATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGG 24820 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| |||||||| || || || || || || || || || | || || || | | Sbjct 24137 AATGCAGATATTCGTCAAGACTCTGACCGGAAAGACAATTACTTTGGAAGTGGAGCCGTC 24196 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| | |||| ||||| | |||||||| || || || |||| | Sbjct 24197 GGACACCATTGAGAACG-TAAAGGCCAAAATCCAAGACAAAGAAGGTATTCCTCCGGATC 24255 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || |||| |||| ||||||||||| || || |||| || || ||| || || | Sbjct 24256 AACAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGAACACTCTCTGATTATA 24315 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | || || |||||| | || || ||| | || | || |||| || || Sbjct 24316 ATATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGG 24364 >seq669 Length=42814 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||||||||| ||||| ||||| || || || || || | || || || ||| | Sbjct 32070 AATGCAAATATTCGTGAAAACCCTCACCGGAAAGACAATTACTTTGGAAGTGGAGGCCTC 32011 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | | | ||||| | |||| ||| |||| ||||| || ||||| || |||| | Sbjct 32010 CGATACCATCGAAAACGTT-AAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATC 31952 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || |||| |||| |||||||||||| | || |||| ||||| ||| || |||| Sbjct 31951 AACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACA 31892 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| || ||| | || || ||| |||| | || ||||| || || Sbjct 31891 ACATCCAAAAAGAGTCAACCCTTCATTTAGTCCTTCGTTTGAGAGGAGG 31843 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||||||||| || ||||| ||||| || || || ||||| | || ||||| || Sbjct 32526 AAAATGCAAATATTTGTGAAAACCCTCACCGGAAAGACTATCACTCTTGAGGTCGAGCCC 32467 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| ||| |||| |||||||| ||||| || |||| Sbjct 32466 TCTGACACTATCGAAAATGTAAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCGGAT 32407 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | || | |||||||||||| | || |||| ||||| ||| || ||| Sbjct 32406 CAGCAGAGATTGATATTTGCGGGCAAACAGTTAGAAGACGGACGCACTCTCTCTGATTAC 32347 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| ||||||||| | || || ||| |||| | || ||||| || || Sbjct 32346 AACATTCAGAAGGAGTCAACCCTTCATTTAGTTCTTCGTTTGAGAGGAGG 32297 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| |||||||| || || ||||| || || ||||| || | || || || || | Sbjct 31842 AATGCAGATATTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGAAGTGGAGGCTTC 31783 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | ||||| | |||| ||| |||| ||||| || || || || |||| | Sbjct 31782 GGATACCATCGAAAACG-TGAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCGGATC 31724 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || |||| |||| |||||||||||| | || |||| ||||| ||| || |||| Sbjct 31723 AACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACA 31664 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| ||||||||| | || || ||| | || | || ||||| || || Sbjct 31663 ACATTCAGAAGGAGTCGACTCTCCATTTGGTTCTTCGTTTGAGAGGAGG 31615 >seq214 Length=17119 Score = 120 bits (132), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 40676 AAACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCG 40735 ||||||| | |||| ||||||| ||||| || ||| | ||||| || |||||||| | | Sbjct 1195 AAACGCTTCCAAAA-TGCAAATCTTCGTCAAGACGTTGACGGGTAAGACCATCACTCTTG 1137 Query 40736 ACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCA 40795 | || || ||| ||| | | | | | |||| ||| |||| ||||| ||||||| Sbjct 1136 AGGTGGAGCCCAGCGATACTATTGAGAATGTAAAGGCAAAGATTCAGGACAAGGAGGGCA 1077 Query 40796 TCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 40855 | || |||| ||||| || | |||| || |||||||| | || |||| | || | Sbjct 1076 TACCTCCGGATCAGCAGCGGTTGATCTTTGCTGGCAAACAATTAGAAGACGGCAGAACTC 1017 Query 40856 TCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCG 40915 | | ||| ||||||||||| |||||| | || || ||| | ||| || | |||| || | Sbjct 1016 TTAGCGATTACAACATCCAAAAGGAGTCGACCCTTCATTTGGTGCTGAGACTGAGAGGAG 957 Query 40916 GCG 40918 ||| Sbjct 956 GCG 954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514856324677200