Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq38498 152 8e-32 seq17432 114 2e-20 seq669 96.9 5e-15 seq214 86.0 9e-12 >seq38498 Length=6817 Score = 152 bits (168), Expect = 8e-32 Identities = 308/462 (67%), Gaps = 0/462 (0%) Strand=Plus/Plus Query 202732 TTTATAATATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACT 202791 ||| | |||||| ||||| || || |||||||| || || |||||| | || | Sbjct 5246 TTTGTGATATTTATTAATGTATTGATTGACATCAAACTTGCGCTCACATCCCTTGTAGTT 5305 Query 202792 CATATATCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACA 202851 ||| || | |||||| || || | || ||||| |||| | ||| ||||||||||| Sbjct 5306 CATGTAACGAATTTTGCCGAACACCGGCCTTTCAGCCCATCCCTGATCGTGAATACCACA 5365 Query 202852 AATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATC 202911 || ||||||||||| || ||||| || || || || ||||| || | || ||||| Sbjct 5366 TATAGACCACATACAGCCGACATACCCGTTGGGGTCGCGTCCGTCCAATTCGTACTTATC 5425 Query 202912 ATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttt 202971 || ||| | || | |||||||| || |||||| || | ||| || Sbjct 5426 GTTCAAAAGAATAGCGAATTCGAGCGCCTGTTCTGGTGTTTGTGTCCACTCGAGTATCTT 5485 Query 202972 tttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTG 203031 || ||||||||||||| | | | ||||||||||| |||| | |||||||| | || Sbjct 5486 CTTTGCCCAATACATTCGCATAAAGCCATGCATTTTGCCATCTCTTGTCATTTGTCTCTG 5545 Query 203032 TGATGCATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATAT 203091 | | ||||| || | ||| ||||| || | || | | | ||| ||| | Sbjct 5546 AGCGGAGTTCCACAACTGGTCGTGAGTCTCAGCCCTCTCTAACTTCTCAAAAGAATAGAG 5605 Query 203092 ATGTTTTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACC 203151 || || | | || || || || ||||| || ||||||| | ||| || Sbjct 5606 ATATTCGCGTTTGTCTTTCCGGTGAGTGTTCAGTGTATTCCGCGCCCAATCGTAAGCGCC 5665 Query 203152 ATTTATATTATCGTAATTTTCATTATAATAACAAAAATTATC 203193 || | |||||| |||||||||||||||||||| ||||||| Sbjct 5666 CTTAAGATTATCATAATTTTCATTATAATAACAGTAATTATC 5707 >seq17432 Length=31749 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| ||||| | ||||| || || || || || || ||| | || | || | Sbjct 24137 AATGCAGATATTCGTCAAGACTCTGACCGGAAAGACAATTACTTTGGAAGTGGAGCCGTC 24196 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || |||| ||||| ||||| ||||||||||| || || ||||| Sbjct 24197 GGACACCATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGTATTCCTCCGGATCA 24256 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || || ||||| || |||||| |||| || | |||||| | |||||||| Sbjct 24257 ACAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGAACACTCTCTGATTATAA 24316 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| || || ||| | |||||||| | ||| | |||| || || Sbjct 24317 TATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGGAAT 24367 Score = 105 bits (116), Expect = 1e-17 Identities = 173/248 (70%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| ||||| | ||| | || | Sbjct 24365 AATGCAAATCTTTGTTAAGACTCTGACCGGAAAAACCATAACCCTTGAGGTGGAGCCCTC 24424 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || ||||| |||||||||||||| || || || || || Sbjct 24425 CGACACCATTGAGAACGTTAAGGCCAAAATCCAAGATAAAGAAGGCATCCCTCCCGACCA 24484 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| || || || || || ||||| || || || | || || | |||||||| Sbjct 24485 ACAAAGACTGATCTTCGCCGGCAAACAGTTGGAAGACGGGCGCACTCTTTCCGATTATAA 24544 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 |||||||| || || || | |||||||| | ||||| |||| || || ||| ||| Sbjct 24545 CATTCAAAAGGAGTCGACCCTTCATTTGGTACTCCGTTTGAGAGGAGGAATGCAAATATT 24604 Query 124777 CATAAAAA 124784 | | |||| Sbjct 24605 CGTCAAAA 24612 Score = 102 bits (112), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| | || ||| | || || || || || ||| | || | || | Sbjct 24593 AATGCAAATATTCGTCAAAACATTGACCGGAAAGACCATCACTTTGGAAGTGGAGCCGTC 24652 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || ||||||||| || ||||| ||||| || || ||||| Sbjct 24653 GGACACCATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGGTATTCCTCCGGATCA 24712 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | ||||| || || || |||||| |||| || | |||||| | || ||||| Sbjct 24713 ACAGCGTCTTATCTTCGCCGGCAAACAACTAGAAGACGGCCGAACACTCTCTGACTATAA 24772 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 ||||||||| || || ||| | |||||||| | ||| | |||| || || ||| ||| Sbjct 24773 TATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGGAATGCAAATATT 24832 Query 124777 C 124777 | Sbjct 24833 C 24833 >seq669 Length=42814 Score = 96.9 bits (106), Expect = 5e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| | || || || || || || || || ||| | || | || || Sbjct 32070 AATGCAAATATTCGTGAAAACCCTCACCGGAAAGACAATTACTTTGGAAGTGGAGGCCTC 32011 Query 124598 TGATACAATTTCTAA-TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || || |||| || || ||||| || || ||||| || || || |||| Sbjct 32010 CGATACCATCGAAAACGTTAAGGCA-AAGATTCAGGACAAGGAAGGCATTCCTCCGGATC 31952 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| || ||||| ||||| || ||||| |||||||| | || || | ||||| | Sbjct 31951 AACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACA 31892 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || |||||||| ||||| | ||||| || | ||||| |||| || || Sbjct 31891 ACATCCAAAAAGAGTCAACCCTTCATTTAGTCCTTCGTTTGAGAGGAGGAAT 31840 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | || || || || || || ||||| ||| | ||| | || | Sbjct 32524 AATGCAAATATTTGTGAAAACCCTCACCGGAAAGACTATCACTCTTGAGGTCGAGCCCTC 32465 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| |||| || ||||| || |||||||| || || || ||||| Sbjct 32464 TGACACTATCGAAAATGTAAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCGGATCA 32405 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || ||||| || ||||| ||||| || | || || | ||||| || Sbjct 32404 GCAGAGATTGATATTTGCGGGCAAACAGTTAGAAGACGGACGCACTCTCTCTGATTACAA 32345 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || ||||| | ||||| ||| | ||||| |||| || || Sbjct 32344 CATTCAGAAGGAGTCAACCCTTCATTTAGTTCTTCGTTTGAGAGGAGGAAT 32294 >seq214 Length=17119 Score = 86.0 bits (94), Expect = 9e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| | || || || || || ||| | ||| | || | | Sbjct 1183 AATGCAAATCTTCGTCAAGACGTTGACGGGTAAGACCATCACTCTTGAGGTGGAGCCCAG 1124 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||| || || || || ||||| || ||||| Sbjct 1123 CGATACTATTGAGAATGTAAAGGCAAAGATTCAGGACAAGGAGGGCATACCTCCGGATCA 1064 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAAC-ATTAGAAGATTATA 124716 || || | || ||||| || ||||||||||| || | |||| |||| ||||| | Sbjct 1063 GCAGCGGTTGATCTTTGCTGGCAAACAATTAGAAGACGGCAGAACTCTTAG-CGATTACA 1005 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | || ||||| || || || | |||||||| Sbjct 1004 ACATCCAAAAGGAGTCGACCCTTCATTTGGT 974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754923922896000