Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq17432 120 3e-22 seq669 107 2e-18 seq214 107 2e-18 >seq17432 Length=31749 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| ||||||||||| |||||| | ||||||| || || Sbjct 24574 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAATCGGAAAGAGTGCGCCCGTCTTCC 24515 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||| || ||| |||| || | || || |||||||| ||||| || || ||| Sbjct 24514 AACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGTCGGGAGGGATGCCTTCTTTATCTTGG 24455 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||||| | || | |||||| | | ||| ||||| | ||| | ||||| Sbjct 24454 ATTTTGGCCTTAACGTTCTCAATGGTGTCGGAGGGCTCCACCTCAAGGGTTATGGTTTTT 24395 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || ||||| || ||||| Sbjct 24394 CCGGTCAGAGTCTTAACAAAGATTTGCAT 24366 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| |||||||||||||||||| | |||||| || || Sbjct 23954 ACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCTTCT 23895 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| || || |||| || | ||| || |||||||| |||||||| ||||| | Sbjct 23894 AGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGGGAGGGATGCCCTCTTTGTCCTGA 23835 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | | ||| ||||| | ||| | ||||| Sbjct 23834 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGAGGGCTCCACCTCAAGGGTAATGGTTTTT 23775 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||||| || ||||| ||||| Sbjct 23774 CCGGTCAACGTTTTCACGAAAATTTGCAT 23746 >seq669 Length=42814 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||||||||| ||||||||||| | |||||| ||||| | |||||| || Sbjct 31873 GTTGACTCTTTTTGGATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCTAACTGTTTGCCC 31932 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | ||| ||||| ||||| ||||| |||||||| ||| ||| ||| Sbjct 31933 GCAAAGATAAGTCTCTGTTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTA 31992 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||| || | | ||| || || | || | || || ||||| || ||| Sbjct 31993 ACGTTTTCGATGGTATCGGAGGCCTCCACTTCCAAAGTAATTGTCTTTCCGGTGAGGGTT 32052 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 32053 TTCACGAATATTTGCAT 32069 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || ||||| || |||||||||||||| | |||||| ||||| Sbjct 31633 ACCAAATGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCT 31692 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||| || || |||| || | ||| ||||| ||||| || || |||||||| | Sbjct 31693 AACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGGAATACCTTCCTTGTCCTGA 31752 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | ||||| ||| |||| ||| || || | || | || || Sbjct 31753 ATCTTTGCCTTCACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAAAGTAATGGTCTTT 31812 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || |||||||| Sbjct 31813 CCGGTGAGGGTCTTCACGAATATCTGCAT 31841 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || |||||||||||||| | |||||| || || | |||||| || Sbjct 32327 GTTGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGTCCGTCTTCTAACTGTTTGCCC 32386 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | | ||||||||| ||||| ||||| || ||||| ||| ||| || Sbjct 32387 GCAAATATCAATCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTT 32446 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||||| | | ||||||||| | || | || || ||||| || ||| Sbjct 32447 ACATTTTCGATAGTGTCAGAGGGCTCGACCTCAAGAGTGATAGTCTTTCCGGTGAGGGTT 32506 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 32507 TTCACAAATATTTGCAT 32523 >seq214 Length=17119 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | ||||| |||||| || | || ||||| ||||| |||||||||||||| Sbjct 956 CCTCCTCTCAGTCTCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGCTA 1015 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | || || | ||||| ||||| |||| | ||||||||||| |||||| Sbjct 1016 AGAGTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAGATCAACCGCTGCTGATCCGGAGGT 1075 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| ||| ||| || || | || | || || || ||| ||| Sbjct 1076 ATGCCCTCCTTGTCCTGAATCTTTGCCTTTACATTCTCAATAGTATCGCTGGGCTCCACC 1135 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || |||| || || || || || ||||| Sbjct 1136 TCAAGAGTGATGGTCTTACCCGTCAACGTCTTGACGAAGATTTGCAT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433532486630740