Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq17432 114 2e-20 seq14363 98.7 1e-15 seq214 95.1 2e-14 seq54144 87.8 3e-12 seq10968 86.0 9e-12 seq669 86.0 9e-12 >seq17432 Length=31749 Score = 114 bits (126), Expect = 2e-20 Identities = 111/140 (79%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| ||||| || | | ||||||||| | ||| || || ||| || ||||||||||| Sbjct 24366 TTCCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGA-ATATTATAATCA 24308 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || || |||| || || |||| |||||| || ||||| |||| ||| || ||||||||| Sbjct 24307 GAGAGTGTTCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGATCCGGA 24248 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| ||||| Sbjct 24247 GGAATACCTTCTTTGTCTTG 24228 Score = 104 bits (114), Expect = 3e-17 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTG 146108 ||| ||||| |||| | |||||||| | || || || ||| || ||||| || || | Sbjct 25049 TCCTCCTCTGAGTCGAAGCACCAAATGAAGGGTCGACTCCTTTTGA-ATATTGTAGTCGG 24991 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | || || | |||||| ||||| || ||||||| |||||||||||||| Sbjct 24990 AAAGAGTGCGCCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAATCGTTGCTGATCCGGAG 24931 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||| ||||| Sbjct 24930 GAATCCCTTCTTTGTCTTG 24912 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| ||||| | | | ||||||||| | || || || ||| || || |||||||| Sbjct 24594 TTCCTCCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTTTGA-ATGTTATAATCG 24536 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 |||||||| | | || || || ||||| || || || |||| |||||| || || ||| Sbjct 24535 GAAAGAGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGTCGGGA 24476 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||||||||| Sbjct 24475 GGGATGCCTTCTTTATCTTG 24456 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| ||||| || | | ||||||||| | ||| || || ||| || |||||||| || Sbjct 24822 TTCCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGA-ATATTATAGTCA 24764 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || || |||| || || |||| |||||| || || || || | | || ||||||||| Sbjct 24763 GAGAGTGTTCGGCCGTCTTCTAGTTGTTTGCCGGCGAAGATAAGACGCTGTTGATCCGGA 24704 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| || ||||| || || Sbjct 24703 GGAATACCCTCTTTGTCCTG 24684 >seq14363 Length=9417 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 10428 ATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTT 10487 ||||| |||||||||||| || |||| || |||| | ||||| ||| | ||| Sbjct 555 ATTCCACAAGGATGTTATGGCCGAATAGCACCACGATCAGGACTAGCTTGGAATCATTTT 496 Query 10488 ATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTA 10547 ||||||||||| || ||||| || ||| ||| | ||||| ||||| ||| | || Sbjct 495 ATTGATATTGGTGCGGGAGTTATAGACCGAGACTTCAGAGGGAATGTTTCGGTAGTCCTA 436 Query 10548 TTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATA 10607 || ||| ||| || | |||| | ||||| || | || ||||||||| |||| | || Sbjct 435 TTCAATTTCTCTGATCATGATTATTTAATACATCGTGGCGATAGAATAGCTCAGCTTATT 376 Query 10608 TGTGAAA 10614 ||||||| Sbjct 375 TGTGAAA 369 >seq214 Length=17119 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||| | |||||||| | || || || || || || ||||| | Sbjct 956 CCTCCTCTCAGTCTCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGCTA 1015 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||||| || ||||||||||| |||||||| ||||| | |||||||||||||| Sbjct 1016 AGAGTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAGATCAACCGCTGCTGATCCGGAGGT 1075 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || || || Sbjct 1076 ATGCCCTCCTTGTCCTG 1092 >seq54144 Length=1810 Score = 87.8 bits (96), Expect = 3e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 10404 ATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGT-TATGCAAGATTAGCTCCCAG 10462 || ||||||||| ||| ||||||| || || || | |||| |||| | ||||| || Sbjct 1450 ATTAAAACTGATATAAAACTAGAAATACCACAAA-ATATATATGGAAGAATTGCTCCAAG 1508 Query 10463 ATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTA 10522 ||| | |||||| ||| | ||||||| |||||| || || | || ||||| Sbjct 1509 ATCGGGATTAGCTTGGAATTATGGTATTGATGTTGGAGGCGGTGTTGTAGATTGTGATTA 1568 Query 10523 TAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAG 10582 |||||| ||| | | ||||| || |||||| ||| || |||||| | || | || Sbjct 1569 TAGAGGCAATATTTGTGTAATTTTGTTTAATTTTTCAAACCAAGATTACTTTATCAGTAA 1628 Query 10583 AGGAGATAGAATATCTCAATTAATATGTGAAAAAATT 10619 ||||||| | || | ||||| | | ||||| |||| Sbjct 1629 AGGAGATCGGGTAGCACAATTGGTTTTTGAAAGAATT 1665 >seq10968 Length=6601 Score = 86.0 bits (94), Expect = 9e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 10365 GCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTAATTATA 10424 || ||||| | ||||||| | | ||||| ||| | ||||| || ||| ||| ||| Sbjct 1744 GCTTATGACTGTATTGTTCCTTCTCATGACAAACAGATAATATTGACAGATATAAGAATA 1685 Query 10425 GAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAA 10484 | ||| ||||| ||||||||| || | || || || |||| | | | ||||| Sbjct 1684 GCAATCCCTAATAATTGTTATGCACGAATTGCACCGAGGTCTGGTCTCTCGTGGAATAAC 1625 Query 10485 TTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGA 10529 || |||||| |||||||||||||||| ||| ||||| ||||| Sbjct 1624 TTCATTGATGTTGGAGCTGGAGTAATCGACCGGGATTACCGAGGA 1580 >seq669 Length=42814 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || ||||| || ||||| | | || ||||| ||||| || ||||| |||||||| Sbjct 32342 ATGTTGTAATCAGAGAGAGTGCGTCCGTCTTCTAACTGTTTGCCCGCAAATATCAATCTC 32401 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| |||||||| || || Sbjct 32402 TGCTGATCCGGAGGAATGCCTTCTTTGTCCTG 32433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743002725062400