Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3673 98.7 1e-15 seq54144 86.0 6e-12 >seq3673 Length=14246 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14589 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14648 ||| |||||| || || ||||||||| ||| |||||||||||||| | || | ||||| Sbjct 13811 CCAGATTTTCGTTGACAATACCATCAGAAGCGGCAAAAAATGCCAAAACGTGTGAAATAA 13752 Query 14649 AGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14708 ||| || ||| | | | | | ||||| || | |||| | || ||||| | Sbjct 13751 AGTGTTTTTCTCTACTATTCAATGAATTCCAGTCTTTGAGATCCCTTCCGAGGTCTACCT 13692 Query 14709 CATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14768 | || |||||||| ||| || | ||| | ||||||||| ||| || ||| | || Sbjct 13691 CTTCTACTGTCCAGAAAGAGGCCTCCGCTCTCTTATACATTTGCCAAATGTCTGTGTACT 13632 Query 14769 ATATAGGAAAAACTACAAATCTTGAAGATGTTTCTTTAAGAATTGGTTC 14817 || ||||| || ||||| | || | |||||||||||| |||||| Sbjct 13631 CAATTGGAAACACCACAAAACGGGACGGGTTTTCTTTAAGAAGTGGTTC 13583 >seq54144 Length=1810 Score = 86.0 bits (94), Expect = 6e-12 Identities = 204/302 (68%), Gaps = 10/302 (3%) Strand=Plus/Minus Query 11601 ATCCCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATCTAAACATTTAACT-TC 11659 || ||||| || ||||| ||||| |||||||| | |||| | |||| | ||| || Sbjct 1739 ATTCCACTAGAACCAAAACCATTCTTATCTCTTTCTGTATTA-CTAAGAAC---ACTCTC 1684 Query 11660 TTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCACTCGATCGCCTCTTTT 11719 | |||| | | | | | | ||||||||| | ||| || || ||||| ||| | | Sbjct 1683 AATCATTTCGGTACAAGCAATTCTTTCAAAAACCAATTGTGCTACCCGATCTCCTTTACT 1624 Query 11720 AATAT--TAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTTACCCCTATAA 11777 ||| ||| | ||| | | ||||| || || || | ||| || || |||||| Sbjct 1623 GATAAAGTAATCTTGGTTTGAAAA--ATTAAACAAAATTACACAAATATTGCCTCTATAA 1566 Query 11778 TCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACCTT 11837 || ||||| ||| || ||||| | ||| || ||||||| | | | || || ||| Sbjct 1565 TCACAATCTACAACACCGCCTCCAACATCAATACCATAATTCCAAGCTAATCCCGATCTT 1506 Query 11838 GGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATCAGTTTTAA-CTAA 11896 || || |||| |||||| |||| ||| || || ||||||||||||||| |||| Sbjct 1505 GGAGCAATTCTTCCATATATATTTTGTGGTATTTCTAGTTTTATATCAGTTTTAATCTAA 1446 Query 11897 AA 11898 || Sbjct 1445 AA 1444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482005877964600