Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3673 132 4e-26 seq17432 131 1e-25 seq214 127 2e-24 seq11840 111 1e-19 seq669 98.7 9e-16 seq4930 89.7 5e-13 >seq3673 Length=14246 Score = 132 bits (146), Expect = 4e-26 Identities = 175/238 (74%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTA--GATTTGTCATGTTTCCGATTGAATATC 57564 || ||||||||| | |||| || ||||| | ||||| ||||||| ||||| || Sbjct 13580 GAAGAACCACTTCTTAAAGAAAA--CCCGTCCCGTTTTGTGGTGTTTCCAATTGAGTACA 13637 Query 57565 CAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAG 57624 ||||||||||| | ||||| || | || || || || || ||||| || ||||| |||| Sbjct 13638 CAGACATTTGGCAAATGTATAAGAGAGCGGAGGCCTCTTTCTGGACAGTAGAAGAGGTAG 13697 Query 57625 ACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAA-AGAATCTGAGAGAA--ATTTTA 57681 |||| | |||||| | || ||| |||| | || || | |||| || | |||| Sbjct 13698 ACCTCGGAAGGGATCTCAAAGACTGGAATTCATTGAATAGTA---GAGAAAAACACTTTA 13754 Query 57682 TTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || |||||| ||||| ||||| ||||| || ||||||||||| ||||| ||| |||| Sbjct 13755 TTTCACACGTTTTGGCATTTTTTGCCGCTTCTGATGGTATTGTCAACGAAAATCTGGT 13812 >seq17432 Length=31749 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||||||||| || ||||| || ||| | || || || || ||| Sbjct 24366 ATGCAAATCTTTGTTAAGACTCTGACCGGAAAAACCATAACCCTTGAGGTGGAGCCCTCC 24425 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| || || |||||| | || |||||||| Sbjct 24426 GACACCATTGAGAACGTTAAGGCCAAAATCCAAGATAAAGAAGGCATCCCTCCCGACCAA 24485 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| |||||||||||||||||| ||| | |||||||||| Sbjct 24486 CAAAGACTGATCTTCGCCGGCAAACAGTTGGAAGACGGGCGCACTCTTTCCGATTATAAC 24545 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || ||||| |||||| ||||||| Sbjct 24546 ATTCAAAAGGAGTCGACCCTTCATTTGGTACT 24577 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| || || |||| || ||||| || ||| | || || || || Sbjct 23743 AAAATGCAAATTTTCGTGAAAACGTTGACCGGAAAAACCATTACCCTTGAGGTGGAGCCC 23802 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | || | || || | || |||||| || ||| | || |||||| Sbjct 23803 TCCGACACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCCGAC 23862 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || ||| | || || || || |||||||| | |||||| ||| | |||||| Sbjct 23863 CAACAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGCACTCTCTCCGATTAC 23922 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||| || || || |||||| ||||||| | ||||| || || Sbjct 23923 AACATTCAAAAGGAGTCAACCCTTCATTTGGTACTCCGTCTGAGAGGAGG 23972 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || |||| || || || ||||| | || || || ||||| Sbjct 24594 ATGCAAATATTCGTCAAAACATTGACCGGAAAGACCATCACTTTGGAAGTGGAGCCGTCG 24653 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || ||| |||||| || || | || || || || Sbjct 24654 GACACCATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGGTATTCCTCCGGATCAA 24713 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT--CTATGACTATGAGCGATTATA 31370 |||||||| || ||||| |||||||| | |||||| | | ||| | | | |||| Sbjct 24714 CAGCGTCTTATCTTCGCCGGCAAACAACTAGAAGACGGCCGAACACTCTCTG--ACTATA 24771 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | |||||||| || |||||||||||| ||||||| | ||||| || || Sbjct 24772 ATATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGG 24820 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| || || || ||||| | || || || ||||| Sbjct 24822 ATGCAAATATTCGTGAAGACATTGACCGGAAAGACCATCACTTTGGAAGTGGAGCCGTCG 24881 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||| ||||| | || || || ||| Sbjct 24882 GACACCATCGAGAATGTAAAGGCTAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAG 24941 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || |||||||||||||| |||||||| ||| | ||| || || Sbjct 24942 CAACGATTGATCTTCGCTGGCAAACAACTGGAAGACGGGCGCACTCTTTCCGACTACAAT 25001 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || ||||| |||||| |||| ||| |||| || || || Sbjct 25002 ATTCAAAAGGAGTCGACCCTTCATTTGGTGCTTCGACTCAGAGGAGG 25048 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || || || || | || || || ||||| Sbjct 24138 ATGCAGATATTCGTCAAGACTCTGACCGGAAAGACAATTACTTTGGAAGTGGAGCCGTCG 24197 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| ||||| ||||| | || || || || Sbjct 24198 GACACCATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGTATTCCTCCGGATCAA 24257 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT--CTATGACTATGAGCGATTATA 31370 ||| | || || || || |||||||| | |||||| | | ||| | | |||||| Sbjct 24258 CAGAGACTGATCTTTGCGGGCAAACAACTAGAAGACGGCCGAACACTCTCTG--ATTATA 24315 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | |||||||| || |||||||||||| ||||||| | ||||| || || Sbjct 24316 ATATTCAAAAGGAGTCGACTCTTCATTTGGTACTCCGTCTGAGAGGAGG 24364 >seq214 Length=17119 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 || || |||||||| ||||| ||||| |||| || || || ||||| | || || || Sbjct 1188 TCCAAAATGCAAATCTTCGTCAAGACGTTGACGGGTAAGACCATCACTCTTGAGGTGGAG 1129 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 || ||| | | | || | || || || ||| | ||||||||| ||| | || || Sbjct 1128 CCCAGCGATACTATTGAGAATGTAAAGGCAAAGATTCA-GGACAAGGAGGGCATACCTCC 1070 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 || |||||||| | || || ||||||||||| || |||||| | ||| | ||||| Sbjct 1069 GGATCAGCAGCGGTTGATCTTTGCTGGCAAACAATTAGAAGACGGCAGAACTCTTAGCGA 1010 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| ||||| ||||| || ||||| |||||| |||| || |||||||| || || Sbjct 1009 TTACAACATCCAAAAGGAGTCGACCCTTCATTTGGTGCTGAGACTGAGAGGAGG 956 >seq11840 Length=1854 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 23267 TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTC 23326 |||||||| | || |||||||| || ||||| | | |||||||| || | Sbjct 1588 TCAAATTCTTCGCCCCAACAGTCGTGAAGTCCGGGACACTCGTGTGGACACATCAGTGAC 1647 Query 23327 CACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAAC 23386 |||||| ||| || ||||| | |||||| || ||||| ||||| || | || ||| Sbjct 1648 CACATTTGGTCTGCCTCTACGCGACGCATAAACAGGTCCGGAATCCAAAGGCCATAAAAC 1707 Query 23387 AGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAAC 23446 || || | ||| | | ||| ||| |||||||| || | ||||| || || | ||| Sbjct 1708 AGATCTCTGGCTCTTAGCTCTTCTGATCCGGTGTTTTTCCTTAAATCTAAGAACTGGAAC 1767 Query 23447 ACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCC 23487 ||||| || ||||||||||| ||||| | ||||||||| || Sbjct 1768 ACGTCTGCGTGCCACGGCTCCAGGTATATGGCAAACGCACC 1808 >seq669 Length=42814 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| || || || || || || || || || ||||| | || || || || Sbjct 32526 AAAATGCAAATATTTGTGAAAACCCTCACCGGAAAGACTATCACTCTTGAGGTCGAGCCC 32467 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | |||||| || || || ||| | |||||| |||||| | || || || Sbjct 32466 TCTGACACTATCGAAAATGTAAAGGCAAAGATTCA-GGACAAAGAAGGCATTCCTCCGGA 32408 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | | ||||| || ||||||||||| |||||| ||| | ||||| Sbjct 32407 TCAGCAGAGATTGATATTTGCGGGCAAACAGTTAGAAGACGGACGCACTCTCTCTGATTA 32348 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || || || |||||| | || ||| | |||| || || Sbjct 32347 CAACATTCAGAAGGAGTCAACCCTTCATTTAGTTCTTCGTTTGAGAGGAGG 32297 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || || || || || || || || | || || || | ||| Sbjct 32069 ATGCAAATATTCGTGAAAACCCTCACCGGAAAGACAATTACTTTGGAAGTGGAGGCCTCC 32010 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||||| || || || ||| | ||||||||||||| | || || || || Sbjct 32009 GATACCATCGAAAACGTTAAGGCAAAGATTCA-GGACAAGGAAGGCATTCCTCCGGATCA 31951 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || || ||||||||||| || ||| ||| | ||||| || Sbjct 31950 ACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACAA 31891 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| |||||||| || || |||||| | || ||| | |||| || || Sbjct 31890 CATCCAAAAAGAGTCAACCCTTCATTTAGTCCTTCGTTTGAGAGGAGG 31843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || || || | || || || | || Sbjct 31841 ATGCAGATATTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGAAGTGGAGGCTTCG 31782 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||||| || || || ||| | |||||||||||| | || || || || Sbjct 31781 GATACCATCGAAAACGTGAAGGCAAAGATTCA-GGACAAGGAAGGTATTCCTCCGGATCA 31723 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || || ||||||||||| || ||| ||| | ||||| || Sbjct 31722 ACAGAGACTTATCTTTGCGGGCAAACAGTTAGAGGACGGCCGCACTCTCTCTGATTACAA 31663 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || |||||||| ||| |||| ||| | |||| || || Sbjct 31662 CATTCAGAAGGAGTCGACTCTCCATTTGGTTCTTCGTTTGAGAGGAGG 31615 >seq4930 Length=2674 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 23789 GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCG 23848 ||||| || || || || |||||||| || || |||||||| |||| ||||||| || | Sbjct 25 GACATCAGGTTATATGTTTCGATGGCAGCGTCGATGTCCTCCGCGTGAATACCGACGGAG 84 Query 23849 ACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATAT 23908 || | ||||| ||| | |||||||| || || | |||||| ||||| |||| ||| Sbjct 85 ACTCTCATCAGCATATGTTGAGGTCGTTCCACAATTTTGCCGTTGATTTTCAACAAATAA 144 Query 23909 GAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 | | | || ||||||||||| || | |||| ||| || Sbjct 145 CTTCTCTCTAATGTCTTAAATCCAAAGTAATTGTAGTGAAAATC 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445452441152400