Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11840 246 4e-60 seq4930 109 7e-19 seq12913 100 4e-16 >seq11840 Length=1854 Score = 246 bits (272), Expect = 4e-60 Identities = 459/674 (68%), Gaps = 24/674 (4%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || || ||||| || | |||| || | || |||||||| || || || || | | Sbjct 726 ACCTGAAACTCTCCGGAGAGGACTCGACGGGAATATATATTACTAGTGTAGGGCTCTATC 785 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||| || || || || || || || || || |||||||| || |||| | | | Sbjct 786 GACTCATTGTTGCCTAATATCTGTGCCGTAGAAGCGGTCGGCATCGGAGCCAACGTAAGA 845 Query 62508 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC 62567 ||||| | | || ||| | ||| || || || || | |||||||||| || || Sbjct 846 CTATTACGTACTCCATATTTGGCGATCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCA 905 Query 62568 GA-------CGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGA 62620 | |||| | ||| ||||| |||||||| ||| | | ||| Sbjct 906 GTTGGCGTTCGGTCCCACATATCG-------TATTGAAGAATACCTTTAGAGACCGGCGA 958 Query 62621 TCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGC 62680 ||| ||||||| ||||| ||||| || | ||| | || |||||| ||||| || || Sbjct 959 ACCTTCATATGTCTCATAAGGTCCCAACTCTTTAGCCAATTCACAACTGGCCTCCAAAGC 1018 Query 62681 ACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAA 62740 |||||||| ||||| ||||| |||| |||| || || ||||| || || ||||| Sbjct 1019 GCCGTAATATATGGTCTCAAAAATCTGGATATTAAGTCGTTTCGCTTCTGGACTTTCAAA 1078 Query 62741 TGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCT 62800 || | | | |||||||| ||| || || || ||||| ||||||||||| |||| Sbjct 1079 GGGCTGACGCATAAGAATAAAACAGTCGGCCAAACCCTGAACTCCAATACCGATGGGTCG 1138 Query 62801 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 62860 ||||||||||||||| || | ||| || | |||||| || |||| || || ||||| Sbjct 1139 GTGTCTCTTATTAGAGCGCTCTGTTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTT 1198 Query 62861 ATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-----AAAT 62915 |||||||||||| || ||||| |||| || || ||||| |||||| | | Sbjct 1199 ATTGAGATTTCTTGTGATAACTTTAGCCACTTCTTTGAGTTTCGCAAAATCGAAGGACAG 1258 Query 62916 CGCCCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTC 62974 | ||| | | || || || ||||| |||| || |||| ||| || || || | ||| Sbjct 1259 CTCCCTTTTGTTGACGAATCGATTCAAAGCAATTGACGCCAAATTGCAGACTGCGATCTC 1318 Query 62975 A--TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 63032 | || | | || || | ||||| || ||||| | || ||||| || ||||| Sbjct 1319 ATCTTTGGA--CGAGTACTCAATTATTTCTGTGCATAAGTTCGAGCACTTAATGGTTCCC 1376 Query 63033 AAATTTTGTTGATT 63046 |||||||||||||| Sbjct 1377 AAATTTTGTTGATT 1390 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACA 63238 ||| |||||||| || || || |||||| | || | || ||||| || | ||||| Sbjct 1578 ATATAATCGTTCAAATTCTTCGCCCCAACAGTCGTGAAGTCCGGGACACTCGTGTGGACA 1637 Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 ||||| |||||| | ||| ||| || || |||||| || || ||||||||||| Sbjct 1638 CATCAGTGACCACATTTGGTCTGCCTCTACGCGACGCATAAACAGGTCCGGAATCCAAAG 1697 Query 63299 AGCTAT-AAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63357 || || ||| |||||||| | ||| | || || ||| || || || | | ||| | Sbjct 1698 -GCCATAAAACAGATCTCTGGCTCTTAGCTCTTCTGATCCGGTGTTTTTCCTTAAATCTA 1756 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||| | | || | |||||||| |||| ||||||||| Sbjct 1757 AGAACTGGAACACGTCTGCGTGCCACGGCTCCAGGTATATGGC 1799 >seq4930 Length=2674 Score = 109 bits (120), Expect = 7e-19 Identities = 309/467 (66%), Gaps = 16/467 (3%) Strand=Plus/Plus Query 63687 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA 63746 || ||||| || ||||| ||||| | || || || || || || || | ||| || Sbjct 1 GACGCGTGAGTGAACCACCGCTCAGACATCAGGTTATATGTTTCGATGGCAGCGTCGATG 60 Query 63747 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATT 63806 ||| ||||| || || | ||| | ||| | ||| || ||||||| ||| |||||| Sbjct 61 TCCTCCGCGTGAATACCGACGGAGACTCTCATCAGCATATGTTGAGGTCGTTCCACAATT 120 Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA- 63865 ||| ||| ||||||||||| || | | || || || ||||| ||||| || ||||| Sbjct 121 TTGCCGTTGATTTTCAACAAATAACTTCTCTCTAATGTCTTAAATCCAAAGTAATTGTAG 180 Query 63866 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGT---TAAC 63922 |||||| |||| || ||||| || | || || || ||| || ||| | | || Sbjct 181 TGAAAA-TCTCTGTCATAAATGATGGCAGAGTTTAGTCGTTCCGAATGTTTTTCAATCAC 239 Query 63923 TATATCCA--TGGTAATACTTGAAATAATCGGAGAATG-TTTCCCATTTTTAGGATTAAC 63979 | ||| | |||| || || || || | | |||| | | | | | Sbjct 240 TTTATAGATCTGGT-----CGGAGATCATAGGCGTCGGCATTCCTGTCCTCTCGTTATGC 294 Query 63980 ATAGTTGA-ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGAT 64038 || || | | || || | || || ||| || ||||| || || |||||||||| Sbjct 295 AT--TTCATACAAGTCTTTGATGACATCAGAGAAGTTCTTTTTGGTCTCTTTGTGTAGAT 352 Query 64039 TTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGG 64098 |||| | |||||||||| || || | || ||||||| |||| ||| || |||| Sbjct 353 TTGAGACCACTATTCTGGCCGCGAGTTTCGCGTAATCCGCGTGTTTTGTGGTCATTGTGG 412 Query 64099 CTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 64145 | ||||||||||| |||| ||||||| || || ||||||||| Sbjct 413 CCGCTATTTCGGCGGCCAATTCATCCAATTTGACAGTCGTTACTCCA 459 >seq12913 Length=27019 Score = 100 bits (110), Expect = 4e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 33260 ATGATTGTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAA 33319 ||||| |||| | | |||||| || |||| || || ||||| || ||||| || || Sbjct 26882 ATGATCCTCTTTGTTGGCCATAACACCACTTTTCTGATACTCACCGACCCGTTTCTCAAA 26941 Query 33320 AAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATT 33379 ||||| || |||||||||||||| || | |||||||||||||||||||||| | ||| Sbjct 26942 GAAATTGGTCTTTCCTTCCAATGAAATTTGTTCCATGAAATCAAACGGATTGTTTGAATT 27001 Query 33380 GTA 33382 ||| Sbjct 27002 GTA 27004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629374011591600