Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq55467 345 1e-90 seq55042 214 5e-51 seq55492 187 7e-43 seq54837 147 6e-31 seq11509 95.1 3e-15 >seq55467 Length=2484 Score = 345 bits (382), Expect = 1e-90 Identities = 753/1121 (67%), Gaps = 10/1121 (1%) Strand=Plus/Plus Query 22872 CATGAGCCGTCCGGAGGACGGTGCCCGTTTTGAACCGTTGATTGGAGATCCCGGAGACGG 22931 ||| | |||||| || || |||||||| || || | ||||| | ||||| || || Sbjct 17 CATAAACCGTCCCATCGATGGGGCCCGTTTCGAGCCACTAATTGGCAACCCCGGCGATGG 76 Query 22932 CGCGTCGCCGAGTTGCGCCCTCATTGATGAATATCACGAGCATCAGAC---CGATGCGCT 22988 || || || | ||| | || ||||||| || || || | | | || || Sbjct 77 GGCTTCTCCTCATCTTGCCATTATCGATGAATTCCATGAACACGAAAATAGCAAT---CT 133 Query 22989 TTACCAGACGATGCAAACTGGGATGGGGGCACGTCGTCAGCCGCTGATTTTTGGTATCAC 23048 ||| || || ||| || || ||||| || || | || ||||| || | || | || Sbjct 134 TTATCACACAATGTTGACCGGTATGGGCGCCCGGCAGCAACCGCTTATCTGGAGTGTGAC 193 Query 23049 CACTGCGGGCTATAACATTGAAGGACCATGCTACGACAAACGTCGTGAAGTGATCGAAAT 23108 || || || || |||| ||||| || || || ||||| || || ||||| || || || Sbjct 194 GACAGCCGGTAATGACATCGAAGGTCCCTGTTATGACAAGCGCCGGGAAGTCATTGATAT 253 Query 23109 GCTTGAAGGGATTGTGCCCAATGATGAACTGTTCGGGATTATTTATACCATTGACGACGG 23168 ||| | | |||||||| || ||| | || ||| | ||||| ||| | || || || Sbjct 254 GCTAACCCAGGTAGTGCCCAACGACGAATTATTTGGGTTAATTTACACCCTCGATGAGGG 313 Query 23169 GGATGACTGGACAGATCCGGCGGTATTGCGTAAAGCGAACCCCAATATGGGGATTTCTGT 23228 || || ||||| | || || | | | ||||| || ||||| ||||| | ||| | Sbjct 314 AGAGGATTGGACCCAGCCAGCCGCCCTCAGCAAAGCCAATCCCAACATGGGCGTCTCTAT 373 Query 23229 CTACAGCGATTACCTGTTATCTCAACAGCGCGCGGCAATTAACAACCCACGAAAAGTGGG 23288 ||| |||| ||| || ||||| | || || ||||| | || ||| Sbjct 374 TTACCCTGATTTTCTGCTAAGCCAACAACAACGAGCCATCAACAATGCCAGACAAGCCAA 433 Query 23289 CGTATTCAAAACGAAACATCTGAATATCTGGGTGGCAGCAAAAGACGCCTTCTTCAATCT 23348 || || ||||| ||||| || |||||||||||| ||||| || |||||||| | Sbjct 434 CGCCTTTAAAACCAAACACCTCAATATCTGGGTGTCAGCACGTTCGGCTTTCTTCAACAT 493 Query 23349 TGTGAACTGGCAGAAATGTGAAGACAGGAGTCTGACGCTGGAGCGTTTTGAGGGGCATAC 23408 |||||||||| |||||||||| || ||||| |||| | || || || || | Sbjct 494 GGTGAACTGGCGCGCTTGTGAAGACACCAGCCTGACTTTGGATCAATTCGAAGGACAAGC 553 Query 23409 CTGCATCCTGGCGTTTGACCTTGCGCGAAAGCTGGATTTGAACGCGATGGTACGGCTTTT 23468 ||| | | |||||| | ||||| ||||| ||| |||| |||| || | || Sbjct 554 CTGTTATTTAGGGTTTGATTTGGCGCGCAAGCTAGATATGAATAGCATGGCCCGCGTGTT 613 Query 23469 TACCCGAGAGATTGACGGTAAAACG-CATTATTATTGTGTCGCACCCAAGTTTTTTGTTC 23527 || ||| |||||| |||| |||||| |||||||| || | || || | ||| | || | Sbjct 614 TATCCGTGAGATTAACGG-AAAACGTCATTATTACAGTATTGCCCCTAGGTTCTGGGTGC 672 Query 23528 CCTACGACACAATCTACAGCGCTGATGTGACAGACAGTCGCACAGCAGAACGTTATCAGA 23587 | ||||||| | ||||| || ||| | || |||||||||| ||||| | ||| | Sbjct 673 CTTACGACAGCGTGTACAGTGCAGATACCAACGATCGTCGCACAGCGGAACGATTTCAAA 732 Query 23588 AGTGGGTTGAAGGGGGATTTATTACCGTTACCGATGGCGCGGAAATTGATTACCGGGAGA 23647 ||||||| | | | | || ||||| || || ||| |||| |||||| | | Sbjct 733 AGTGGGTCAATATGCACCAGCTAATCGCGACCGACGGGGCAGAAGTTGACTACCGGTATA 792 Query 23648 TCCTTGAGTCTGCGAAAGAAGCAAATCGCTTAAACGCAGTGGAGGAGTCACCTATAGATC 23707 |||| || || || | || || | | ||| | || | | | ||| | || |||| Sbjct 793 TCCTCGAAGAAGCAAAGGCCGCTAACTGTCTTAACCCGGTCGTGCAATCAGCGATCGATC 852 Query 23708 CCCACGGAGCCACAAACCTTTCTCACCACCTTGCTGATGA-AAACTTAAACCCTATTACC 23766 | || || ||||| ||| ||| || | || || || ||||| |||||| | ||| Sbjct 853 CTCATGGCGCCACTGGCCTGAGTCATCAGTTGGCCGACGAGCAACTT-AACCCTGTCACC 911 Query 23767 ATCATTCAGAACTACACCAATATGTCGGATCCCATGAAGGAACTTGAGGCGGCTATTGAG 23826 || || || || ||||| ||||||| ||| ||||||| ||| | || || || ||||| Sbjct 912 ATTATCCAAAATTACACGCATATGTCAGATGCCATGAAAGAATTGGAAGCCGCCATTGAA 971 Query 23827 GCCGGGCGTTTTCATCATGATGGTAATCCTGTGATGACATGGTGTATCAGCAACGTGATT 23886 | || || ||||| || |||||| | || | ||||| ||||| |||||||||||| | Sbjct 972 TCTGGCCGCTTTCACCACGATGGTCACCCCATCATGACCTGGTGCATCAGCAACGTGGTG 1031 Query 23887 GGAAAGCACATTCCCGGCGACGATGATGTTGTTCGTCCGATCAAACAAGGCAACGAAAAC 23946 || || || | || || ||||||| ||||||| ||||| ||| || | |||||| Sbjct 1032 GGTAAACATGTGCCGGGTAACGATGACATTGTTCGCCCGATAAAAGAACAGGAAGAAAAC 1091 Query 23947 AAAATCGATGGTGCTGTGGCGCTGATTATGGCGATTGGTCG 23987 ||||| || || || || || | || ||||| ||||||| Sbjct 1092 AAAATTGACGGCGCCGTCGCATTAATCATGGCAGTTGGTCG 1132 >seq55042 Length=1078 Score = 214 bits (236), Expect = 5e-51 Identities = 257/347 (74%), Gaps = 2/347 (1%) Strand=Plus/Minus Query 30853 AATGGCAAAGATCGCCGGAACCTGtttttttAAAGTGGATGGTCAGCAGTTATCGCTGAC 30912 |||||| ||||| ||||| ||||||| || ||||| ||||| | |||||||| ||||| Sbjct 884 AATGGCTAAGATTGCCGGCACCTGTTACTTCAAAGTAGATGGGTATCAGTTATCTCTGAC 825 Query 30913 AGGTGGCATTGAAGTGCCGATGAACACCAATGTCCGGGATGATGTCGTCGGCATGGCTGG 30972 ||| || |||||||| ||||||||||| ||| | || ||| || ||||| |||| || Sbjct 824 AGGGGGAATTGAAGTCCCGATGAACACAGTGGTCAGAGAAGATATCATCGGCCTGGCAGG 765 Query 30973 TGATGTGGATTACAAGGAGACCTGGCGGTCACCTTACGTTAAGGGCACGTTTAAAGTGCC 31032 ||||| |||||||| || || | || | ||| || | || || |||||||| ||||| Sbjct 764 GGATGTAGATTACAAAGAAACTTACAGGGCGCCTCACATAAAAGGAACGTTTAAGGTGCC 705 Query 31033 CAAAAATTTTCCGGTCGACAAAATTACCGCCTCAGACCAG-ATGACGATTACTGCCGAGC 31091 || || || ||||| | | |||| ||||| ||||| || || || || | Sbjct 704 AGCGCGCTTCCCTAAAGATAAAATCATCAGCTCA-ACCAGCATGACCATCACAGCAGAAC 646 Query 31092 TGGCAAACGGCATGGTGTATGTGCTTTCGGCGGCCTGGCTGCATGGCGAAGCAAACCATA 31151 |||||||| ||||||| || || | || | ||| ||||||||||| ||||| || || Sbjct 645 TGGCAAACAGCATGGTTTACGTCTTATCAGGGGCTTGGCTGCATGGTGAAGCGAATGTTA 586 Query 31152 ATGCCGAAGAAGGTACGGCAGATCTTGAATTCCACGGCGAAGAGGGA 31198 ||||||||||||| | | || || ||||| || || ||||| ||| Sbjct 585 ATGCCGAAGAAGGAAAAGTGGAGCTGGAATTTCATGGTGAAGAAGGA 539 >seq55492 Length=1043 Score = 187 bits (206), Expect = 7e-43 Identities = 402/595 (68%), Gaps = 17/595 (3%) Strand=Plus/Plus Query 22190 AAAAACCCGGCACTCACGGCGGCAAATGAGGCCGCCAGACAAATGGTGACATTCGGTAGT 22249 |||||||| ||| | |||| ||||| ||| | |||||||| || || || | Sbjct 456 AAAAACCCTGCATTAACGGTACTGAATGAAGCCATGAAACAAATGGCCACTTTTGGCGGC 515 Query 22250 TTATTAGGGCTCGATCCTGCCAGTCGGCAGCGGCTTATGACGCCG---AAGCAGGGGAGC 22306 | ||||| || ||||| | || || |||||||| || | | || || | | Sbjct 516 ATGTTAGGACTGGATCCCGGTAGCCGACAGCGGCTCATCGGGTCAGGTAAAAAGAAGTCC 575 Query 22307 GATAATCCATTTAAAAACCTATGACACGAAAAAA-TTACGTGAACGTTAACGCCGCAAAT 22365 |||||||| ||||| || ||||| ||| |||| ||||| | || | | Sbjct 576 GATAATCCTTTTAAGAATTTATGA-ACGCCCGGGCTTACCCTAACGTCGCGTCGGCTACT 634 Query 22366 CAGTATGCACGTGACGTGGTTCGCGGAAAAATTCAGGTTTGCCGTTATGTCGTTCTGGCC 22425 ||||| || ||||| ||| || ||||||||| | ||||| ||||| | |||| Sbjct 635 CAGTACGCCCGTGAGGTGACCCGAGGAAAAATTATTGCCTGCCGCTATGTGATCGAGGCC 694 Query 22426 TGCCAGCGTCACCTTGATGACCTGGAAAACTCAGCTaaaaaa--aa--CTATCCGTTTAA 22481 || || ||||| || || || | | ||| ||||| || | || || ||| Sbjct 695 TGTCAACGTCATCTAGACGATTTAGTG------GCTGAAAAAGGAAGCCAATTCGCTTAT 748 Query 22482 ATTT--GATAAGGATAAAGCTGAGCGTGTGGCGAAATTTATCCAGCTTTTGCCACACACC 22539 || || || ||| ||||||| || | || ||||||||||| | ||||| |||||| Sbjct 749 CGTTTCGACAAAGATCAAGCTGAACGCGCCGCAAAATTTATCCAAATGTTGCCTCACACC 808 Query 22540 AAAGGGGAGTGGGCATTTAAACGGATGCCCATTACGCTTGAACCCTGGCAGTTGTTCTGT 22599 |||||||| ||||| |||||||| | ||| || | | |||||||||| || | Sbjct 809 AAAGGGGAATGGGCGTTTAAACGACAACTCATCACATTAGCACCCTGGCAGCGTTTTATT 868 Query 22600 ATTTGTGTTGTGTTTGGGTGGGTGAGAAAAAAGAGCGGCCTGCGTCGATTTCGCGAGGCT 22659 || || ||| ||||| ||| || ||||| | | | |||| || || || || | Sbjct 869 ATCTGCTGTGTCTTTGGTTGGATGCGAAAAGGCACCCGATTGCGCCGGTTCCGTGAAGTG 928 Query 22660 TACAACGAAATACCCCGTAAAAACGGGAAATCAGCAATGTCTGCTGGCGTTGGTCTGTAT 22719 |||| ||||| || ||||||||||| |||||||| || | || || || | ||| | Sbjct 929 TACACGGAAATTCCTCGTAAAAACGGTAAATCAGCGATCGCAGCCGGTGTCGCCTTGTTT 988 Query 22720 ATGTTTGCCTGCGATGATGAATTTGGCGCTGAAGTGTATTCCGGGGCCACAACAG 22774 ||| | || ||||| ||||| ||||||||||| |||||||| || ||||||| Sbjct 989 TGTTTTTCTTGTGATGACGAATTCGGCGCTGAAGTCTATTCCGGCGCTACAACAG 1043 >seq54837 Length=669 Score = 147 bits (162), Expect = 6e-31 Identities = 195/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 30373 TGACAGAGCAGCAGACCCTTTTATCTCACGGCGTGGCGACGGCTTATGTGGAAGGCGGCA 30432 |||| || ||||| | || ||| | || ||| | || ||||| || || |||||||| Sbjct 312 TGACTGAACAGCAATCACTGTTAACCCATGGCATCGCCACGGCCTACGTAGAAGGCGGGC 253 Query 30433 CGTTGCGGATCCAGCGTTCCGTAACCACATACAAAAAGAATGCATATGGCGTGGCAGACA 30492 | ||||||| || ||| | ||||| ||| | || ||||| || ||| || || | Sbjct 252 AGCTGCGGATTCAACGTGAAATCACCACCTACCAGAAAAATGCTTACGGCAATGCTGATA 193 Query 30493 ACAGCTATCTGGACAGTGAAACACTGCATACCAGCGCATATGTTCTTCGCAAACTGAAAT 30552 |||||||||||||||| ||||| |||||||||| || ||||| || | |||||| Sbjct 192 ACAGCTATCTGGACAGCGAAACCTTGCATACCAGTGCTTATGTGCTGAGACGCCTGAAAA 133 Query 30553 CGGTCATCACAAGCAAGTACGGACGCCACAAGCTGGCAAATGATGGTACCCGTTTTGGTC 30612 || ||||| ||||| || ||| ||||| | || ||||| || || || ||||| | Sbjct 132 GTGTGATCACGAGCAAATATTCACGACACAAATTAGCCAATGACGGGACGCGCTTTGGGC 73 Query 30613 CTGGGCAGGCGATTGTTACTCCTGCCGTTAT 30643 | ||||| || || || || |||| ||| || Sbjct 72 CAGGGCAAGCCATCGTCACCCCTGTCGTCAT 42 >seq11509 Length=51200 Score = 95.1 bits (104), Expect = 3e-15 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 17158 GGCCCTTTAGCTAAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 17216 ||||| |||||| ||| ||| ||||| |||||||||||||||| |||||||||||| || Sbjct 31927 GGCCCCTTAGCTCAGTTGGTTAGAGCAAGCGACTCATAATCGCTGGGTCGCTGGTTCGAA 31986 Query 17217 TCCAGCAAGGGCCACCA 17233 ||||||| ||||||||| Sbjct 31987 TCCAGCAGGGGCCACCA 32003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136027323603930