Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11840 221 2e-52 seq4930 107 3e-18 seq43315 95.1 2e-14 seq6890 93.3 6e-14 >seq11840 Length=1854 Score = 221 bits (244), Expect = 2e-52 Identities = 453/674 (67%), Gaps = 24/674 (4%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||| ||||| || | |||| || | || |||||||| || || || || | Sbjct 726 ACCTGAAACTCTCCGGAGAGGACTCGACGGGAATATATATTACTAGTGTAGGGCTCTATC 785 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||| || || || || || || || || || |||||||| || |||| | | | Sbjct 786 GACTCATTGTTGCCTAATATCTGTGCCGTAGAAGCGGTCGGCATCGGAGCCAACGTAAGA 845 Query 65301 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 65360 ||||| | | || ||| | ||| || || || || |||||||||| || || Sbjct 846 CTATTACGTACTCCATATTTGGCGATCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCA 905 Query 65361 GA-------CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGA 65413 | |||| | || ||| |||||||| ||| | | ||| Sbjct 906 GTTGGCGTTCGGTCCCACATATCGTA-------TTGAAGAATACCTTTAGAGACCGGCGA 958 Query 65414 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 65473 ||| ||||||| || || ||||| || | ||| | ||||||||| ||||| || || Sbjct 959 ACCTTCATATGTCTCATAAGGTCCCAACTCTTTAGCCAATTCACAACTGGCCTCCAAAGC 1018 Query 65474 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 65533 |||||||| ||||| || || |||| |||| || || ||||| | || ||||| Sbjct 1019 GCCGTAATATATGGTCTCAAAAATCTGGATATTAAGTCGTTTCGCTTCTGGACTTTCAAA 1078 Query 65534 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 65593 || | | | |||||||| ||| || || || ||||| ||||||||||| |||| Sbjct 1079 GGGCTGACGCATAAGAATAAAACAGTCGGCCAAACCCTGAACTCCAATACCGATGGGTCG 1138 Query 65594 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 65653 ||||||||||||||| || | ||| || | |||||| || |||| || || ||||| Sbjct 1139 GTGTCTCTTATTAGAGCGCTCTGTTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTT 1198 Query 65654 ATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-----AAAT 65708 |||||||||||| || ||||| |||| || || ||||| |||||| | | Sbjct 1199 ATTGAGATTTCTTGTGATAACTTTAGCCACTTCTTTGAGTTTCGCAAAATCGAAGGACAG 1258 Query 65709 CGCTCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTC 65767 | | | | | || || || ||||| |||| || |||| ||| || || || | ||| Sbjct 1259 CTCCCTTTTGTTGACGAATCGATTCAAAGCAATTGACGCCAAATTGCAGACTGCGATCTC 1318 Query 65768 A--TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 65825 | || | | || || | ||||| || ||||| | || ||||| |||||||| Sbjct 1319 ATCTTTGGA--CGAGTACTCAATTATTTCTGTGCATAAGTTCGAGCACTTAATGGTTCCC 1376 Query 65826 AAATTTTGTTGATT 65839 |||||||||||||| Sbjct 1377 AAATTTTGTTGATT 1390 Score = 89.7 bits (98), Expect = 7e-13 Identities = 173/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 65942 TTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAAC 66001 ||| || |||||| |||| ||| | ||| |||||||| || || || |||||| Sbjct 1548 TTTATACTTCTTTTGGTTTTCATATTTTTCATATAATCGTTCAAATTCTTCGCCCCAACA 1607 Query 66002 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 66061 | || | ||| ||||| || | |||||||||| |||||| | ||| ||| || Sbjct 1608 GTCGTGAAGTCCGGGACACTCGTGTGGACACATCAGTGACCACATTTGGTCTGCCTCTAC 1667 Query 66062 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAATAAATCTCTGGTTCTATGTT 66120 || |||||| || || ||||||||||| || || ||| | |||||||| ||| | | Sbjct 1668 GCGACGCATAAACAGGTCCGGAATCCAAAG-GCCATAAAACAGATCTCTGGCTCTTAGCT 1726 Query 66121 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTT 66180 | || ||| || || || | | ||| | |||| | | || |||||||| | Sbjct 1727 CTTCTGATCCGGTGTTTTTCCTTAAATCTAAGAACTGGAACACGTCTGCGTGCCACGGCT 1786 Query 66181 CCAAGTATATGGC 66193 ||| ||||||||| Sbjct 1787 CCAGGTATATGGC 1799 >seq4930 Length=2674 Score = 107 bits (118), Expect = 3e-18 Identities = 307/463 (66%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 66480 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA 66539 || ||||| || ||||| ||||| | || || || || || || || | ||| || Sbjct 1 GACGCGTGAGTGAACCACCGCTCAGACATCAGGTTATATGTTTCGATGGCAGCGTCGATG 60 Query 66540 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 66599 ||| ||||| || || | ||| | ||| | ||| || ||||||| ||| || || Sbjct 61 TCCTCCGCGTGAATACCGACGGAGACTCTCATCAGCATATGTTGAGGTCGTTCCACAATT 120 Query 66600 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA- 66658 ||| ||| ||||||||||| || | | || || || ||||| ||||| || ||||| Sbjct 121 TTGCCGTTGATTTTCAACAAATAACTTCTCTCTAATGTCTTAAATCCAAAGTAATTGTAG 180 Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTAC 66718 |||||| |||| || ||||| || | ||||| ||| ||| || ||| | || || Sbjct 181 TGAAAA-TCTCTGTCATAAATGATGGCAGAGTTTAGTCGTTCCGAATGTTTTTCAATCAC 239 Query 66719 ATCCATGGTAATACT-TGAAATAATCGGAGAATG-TTTCCCATTTTTAGGATTGACATAG 66776 | || | | | || || || || | | |||| | | | | ||| Sbjct 240 -TTTATAGATCTGGTCGGAGATCATAGGCGTCGGCATTCCTGTCCTCTCGTTATGCAT-- 296 Query 66777 TTGA-ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGA 66835 || | | || || | || || ||| || ||||| || ||||||||||||||||| Sbjct 297 TTCATACAAGTCTTTGATGACATCAGAGAAGTTCTTTTTGGTCTCTTTGTGTAGATTTGA 356 Query 66836 TACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGC 66895 || ||||||| || || | | || ||||||| |||| ||| || ||||| || Sbjct 357 GACCACTATTCTGGCCGCGAGTTTCGCGTAATCCGCGTGTTTTGTGGTCATTGTGGCCGC 416 Query 66896 TATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 66938 ||||||||| |||| ||||||| || || ||||||||| Sbjct 417 TATTTCGGCGGCCAATTCATCCAATTTGACAGTCGTTACTCCA 459 >seq43315 Length=222 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 66201 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 66260 || ||||||||||| |||||||| |||| |||| |||||| || |||||||||| | | Sbjct 75 CCGGGCCGTTTGTTCCCTCCCTGGTCTACATATCGAGCGGTATTGTTATAAACTCGAAGC 134 Query 66261 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGA 66320 || |||| | |||||||||||| || || || |||| ||| || | || |||||| Sbjct 135 ATAGGAACCAAACCATTGGATGTGCCGTTAGTGCCGGCGATGTAAGTGCCCGCCGCACGA 194 Query 66321 AT 66322 || Sbjct 195 AT 196 >seq6890 Length=28606 Score = 93.3 bits (102), Expect = 6e-14 Identities = 130/176 (74%), Gaps = 10/176 (6%) Strand=Plus/Minus Query 31145 CTCCAAGATACCAGTATACCTCAAAAATTTGAGTGAGATCTGCTGCCAA--GTTC-CTAT 31201 |||| | ||||||||| || || || |||| | | |||| | ||||| ||| | || Sbjct 16680 CTCCCAAATACCAGTAAACTTCGAATATTTTGGATAAATCTTCGGCCAAAAGTTGGCAAT 16621 Query 31202 TATTGAACATCGCAATACCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAG 31261 ||| || | |||| || | ||||||||| ||||||||||||||||| |||||||| | Sbjct 16620 CATTCAAAA---CAATCCCCATTTCCTTGACATGAGTTAATGATCTCCAGTCCATATTCG 16564 Query 31262 CGCTTCCTAAATAAATATGTGTATTATCAGATATCCAA--AATTTTGTATGAAGAA 31315 |||| || | ||| | || | | ||||| ||| | || |||||||| || |||| Sbjct 16563 CGCTCCCGATATATAAATCTTTTTTATC-GAT-TAGAATGAATTTTGTGTGGAGAA 16510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657709240669800