Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11840 248 1e-60 seq4930 104 3e-17 seq12913 100 4e-16 seq43315 89.7 7e-13 >seq11840 Length=1854 Score = 248 bits (274), Expect = 1e-60 Identities = 457/667 (69%), Gaps = 10/667 (1%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||| ||||| || | |||| || | || |||||||| || || || || | | Sbjct 726 ACCTGAAACTCTCCGGAGAGGACTCGACGGGAATATATATTACTAGTGTAGGGCTCTATC 785 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||| || || || || || || || || || || ||||| || |||| | | | Sbjct 786 GACTCATTGTTGCCTAATATCTGTGCCGTAGAAGCGGTCGGCATCGGAGCCAACGTAAGA 845 Query 79180 CTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239 ||||| | | || ||| ||| || || || || |||||| ||| || ||| Sbjct 846 CTATTACGTACTCCATATTTGGCGATCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCA 905 Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTG 79299 | || | ||| | ||| ||||| |||||||| ||| | || ||| Sbjct 906 GTTGGCGTTCGGTCCCACATATCGTATTGAAGAATACCTTTAGAGACCGGCGAACCTTCA 965 Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 ||||| ||||||||||| || || || ||||||||||| ||||| || || |||||| Sbjct 966 TATGTCTCATAAGGTCCCAACTCTTTAGCCAATTCACAACTGGCCTCCAAAGCGCCGTAA 1025 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || ||||| || ||||||| |||| || || |||||| | || ||||| || | | Sbjct 1026 TATATGGTCTCAAAAATCTGGATATTAAGTCGTTTCGCTTCTGGACTTTCAAAGGGCTGA 1085 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | |||||||| ||| || || || ||||| ||||||||||| |||| |||||| Sbjct 1086 CGCATAAGAATAAAACAGTCGGCCAAACCCTGAACTCCAATACCGATGGGTCGGTGTCTC 1145 Query 79480 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 79539 |||||||| || | ||| || | |||||| || |||| || || |||||||||||| Sbjct 1146 TTATTAGAGCGCTCTGTTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTTATTGAGA 1205 Query 79540 TTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATC-----AAATCGTCCAT 79594 || || || ||||| |||| || || ||||| |||||| | | | || | Sbjct 1206 TTTCTTGTGATAACTTTAGCCACTTCTTTGAGTTTCGCAAAATCGAAGGACAGCTCCCTT 1265 Query 79595 CTATT-ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCA--TTAG 79651 | || || || ||||| || | || |||| ||| || || || | |||| || | Sbjct 1266 TTGTTGACGAATCGATTCAAAGCAATTGACGCCAAATTGCAGACTGCGATCTCATCTTTG 1325 Query 79652 CATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTT 79711 | || || | |||||||| ||||| | ||| |||||||||||||| ||||||| Sbjct 1326 GA--CGAGTACTCAATTATTTCTGTGCATAAGTTCGAGCACTTAATGGTTCCCAAATTTT 1383 Query 79712 GTTGATT 79718 ||||||| Sbjct 1384 GTTGATT 1390 Score = 120 bits (132), Expect = 4e-22 Identities = 175/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 79829 TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTA 79888 |||||| |||| |||| | |||||||||||| || || || |||||| |||| | Sbjct 1556 TCTTTTGGTTTTCATATTTTTCATATAATCGTTCAAATTCTTCGCCCCAACAGTCGTGAA 1615 Query 79889 ATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCA 79948 ||| ||||| |||| |||||||||| |||||| | || ||| ||| || || Sbjct 1616 GTCCGGGACACTCGTGTGGACACATCAGTGACCACATTTGGTCTGCCTCTACGCGACGCA 1675 Query 79949 TAAAGAGATCAGGAATCCAAAGAGCTAT-AAATAGATCTCTGGTTCTATGCTCCTCGTTT 80007 |||| || || ||||||||||| || || ||| |||||||||| ||| |||| || | Sbjct 1676 TAAACAGGTCCGGAATCCAAAG-GCCATAAAACAGATCTCTGGCTCTTAGCTCTTCTGAT 1734 Query 80008 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 80067 || || || || | | ||| | |||| | | || | |||||||| |||| |||| Sbjct 1735 CCGGTGTTTTTCCTTAAATCTAAGAACTGGAACACGTCTGCGTGCCACGGCTCCAGGTAT 1794 Query 80068 ATGGC 80072 ||||| Sbjct 1795 ATGGC 1799 >seq4930 Length=2674 Score = 104 bits (114), Expect = 3e-17 Identities = 306/463 (66%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 80359 GAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA 80418 || ||||| || ||||| ||||||| || || || || || || || | || || Sbjct 1 GACGCGTGAGTGAACCACCGCTCAGACATCAGGTTATATGTTTCGATGGCAGCGTCGATG 60 Query 80419 TCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 80478 ||| ||||| || || | ||| | ||| | ||| || ||||||| ||| || || Sbjct 61 TCCTCCGCGTGAATACCGACGGAGACTCTCATCAGCATATGTTGAGGTCGTTCCACAATT 120 Query 80479 TTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA- 80537 ||| || ||||||||||| ||| | | || || || ||||| ||||| || ||||| Sbjct 121 TTGCCGTTGATTTTCAACAAATAACTTCTCTCTAATGTCTTAAATCCAAAGTAATTGTAG 180 Query 80538 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTAC 80597 |||||| |||| || ||||| || | ||||| ||| ||| || ||| | || || Sbjct 181 TGAAAA-TCTCTGTCATAAATGATGGCAGAGTTTAGTCGTTCCGAATGTTTTTCAATCAC 239 Query 80598 ATCCATGGTGATACT-TGAAATAATCGGAGAATG-TTTCCCATTTTTAGGATTAACATAG 80655 | || | | | || || || || | | |||| | | | | ||| Sbjct 240 -TTTATAGATCTGGTCGGAGATCATAGGCGTCGGCATTCCTGTCCTCTCGTTATGCAT-- 296 Query 80656 TTGA-ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGA 80714 || | | || || | || || ||| || ||||| || || |||||||||||||| Sbjct 297 TTCATACAAGTCTTTGATGACATCAGAGAAGTTCTTTTTGGTCTCTTTGTGTAGATTTGA 356 Query 80715 TACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGC 80774 || |||||||||| || | | || ||||| | |||| ||| || ||||| || Sbjct 357 GACCACTATTCTGGCCGCGAGTTTCGCGTAATCCGCGTGTTTTGTGGTCATTGTGGCCGC 416 Query 80775 TATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 80817 ||||||||| |||| ||||||| || || ||||||||| Sbjct 417 TATTTCGGCGGCCAATTCATCCAATTTGACAGTCGTTACTCCA 459 >seq12913 Length=27019 Score = 100 bits (110), Expect = 4e-16 Identities = 106/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 49614 TTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 49670 ||| |||||| | || ||| || | || ||| |||| | |||||| || |||| Sbjct 26855 TTAGAAGTCAGCGTCGAGAACGAACTTATGATCCTCTTTGTTGGCCATAACACCACTTTT 26914 Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 || || ||||| || ||||| || || ||||| || |||||||||||||| || | ||| Sbjct 26915 CTGATACTCACCGACCCGTTTCTCAAAGAAATTGGTCTTTCCTTCCAATGAAATTTGTTC 26974 Query 49731 CATGAAATCAAACGGATTG 49749 ||||||||||||||||||| Sbjct 26975 CATGAAATCAAACGGATTG 26993 >seq43315 Length=222 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 80080 CCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 80139 || || |||||||| |||||||| |||| |||| |||||| || |||||||||| | | Sbjct 75 CCGGGCCGTTTGTTCCCTCCCTGGTCTACATATCGAGCGGTATTGTTATAAACTCGAAGC 134 Query 80140 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 80199 || |||| | |||||||||||| || || || |||| ||| || | || |||||| Sbjct 135 ATAGGAACCAAACCATTGGATGTGCCGTTAGTGCCGGCGATGTAAGTGCCCGCCGCACGA 194 Query 80200 AT 80201 || Sbjct 195 AT 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717762914305800