Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3673 102 8e-17 seq54144 89.7 5e-13 >seq3673 Length=14246 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 ||| |||||| || || ||||||||| ||| |||||||||||||| | || | ||||| Sbjct 13811 CCAGATTTTCGTTGACAATACCATCAGAAGCGGCAAAAAATGCCAAAACGTGTGAAATAA 13752 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTT 14376 ||| || ||| | | || | | ||||| || | |||| | || ||||| | Sbjct 13751 AGTGTTTTTCTCTACTATTCAATGAATTCCAGTCTTTGAGATCCCTTCCGAGGTCTACCT 13692 Query 14377 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14436 | || |||||||| ||| || | ||| | ||||||||| ||| || ||| | || Sbjct 13691 CTTCTACTGTCCAGAAAGAGGCCTCCGCTCTCTTATACATTTGCCAAATGTCTGTGTACT 13632 Query 14437 ATATAGGAAAAACTACAAATCTCGAAGATGTTTCTTTAAGAATTGGTTC 14485 || ||||| || ||||| | || | |||||||||||| |||||| Sbjct 13631 CAATTGGAAACACCACAAAACGGGACGGGTTTTCTTTAAGAAGTGGTTC 13583 >seq54144 Length=1810 Score = 89.7 bits (98), Expect = 5e-13 Identities = 205/302 (68%), Gaps = 10/302 (3%) Strand=Plus/Minus Query 11268 ATACCACTTGACCCAAATCCATTATTATCTCTATTTGTACCATCTAAACATTTAACT-TC 11326 || ||||| || ||||| ||||| |||||||| | |||| | |||| | ||| || Sbjct 1739 ATTCCACTAGAACCAAAACCATTCTTATCTCTTTCTGTATTA-CTAAGAAC---ACTCTC 1684 Query 11327 TTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAGCCACCCGATCGCCTCTTTT 11386 | |||| | | | | | | ||||||||| | ||| || |||||||| ||| | | Sbjct 1683 AATCATTTCGGTACAAGCAATTCTTTCAAAAACCAATTGTGCTACCCGATCTCCTTTACT 1624 Query 11387 AATAT--TAAATGTATTTTTACCATTATTAATAAATATAACTCCAATGTTACCCCTATAA 11444 ||| ||| | ||| | | ||||| || || || | ||| || || |||||| Sbjct 1623 GATAAAGTAATCTTGGTTTGAAAA--ATTAAACAAAATTACACAAATATTGCCTCTATAA 1566 Query 11445 TCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACCTT 11504 || ||||| ||| || ||||| | ||| || ||||||| | | | || || ||| Sbjct 1565 TCACAATCTACAACACCGCCTCCAACATCAATACCATAATTCCAAGCTAATCCCGATCTT 1506 Query 11505 GGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATCAGTTTTAA-CTAA 11563 || || |||| |||||| |||| ||| || || ||||||||||||||| |||| Sbjct 1505 GGAGCAATTCTTCCATATATATTTTGTGGTATTTCTAGTTTTATATCAGTTTTAATCTAA 1446 Query 11564 AA 11565 || Sbjct 1445 AA 1444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479390121573000