Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3673 98.7 9e-16 seq54144 96.9 3e-15 >seq3673 Length=14246 Score = 98.7 bits (108), Expect = 9e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 14050 ttttCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109 ||||| || |||||||||||| ||| |||||||||||||| | || | |||||||| | Sbjct 13806 TTTTCGTTGACAATACCATCAGAAGCGGCAAAAAATGCCAAAACGTGTGAAATAAAGTGT 13747 Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14169 | ||| | | || | | ||||| || | |||| | || ||||| || || Sbjct 13746 TTTTCTCTACTATTCAATGAATTCCAGTCTTTGAGATCCCTTCCGAGGTCTACCTCTTCT 13687 Query 14170 ACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14229 |||||||| ||| || | ||| | ||||||||| ||| || ||| | || || Sbjct 13686 ACTGTCCAGAAAGAGGCCTCCGCTCTCTTATACATTTGCCAAATGTCTGTGTACTCAATT 13627 Query 14230 GGAAAAACTACAAATCTTGAAGATGTTTCTTTAAGAATTGGCTC 14273 ||||| || ||||| | || | |||||||||||| ||| || Sbjct 13626 GGAAACACCACAAAACGGGACGGGTTTTCTTTAAGAAGTGGTTC 13583 >seq54144 Length=1810 Score = 96.9 bits (106), Expect = 3e-15 Identities = 208/304 (68%), Gaps = 14/304 (5%) Strand=Plus/Minus Query 11082 ATCCCACTTGAACCAAATCCATTATTATCTCTATTTGTACCATCTAAACATTTAACT-TC 11140 || ||||| |||||||| ||||| |||||||| | |||| | |||| | ||| || Sbjct 1739 ATTCCACTAGAACCAAAACCATTCTTATCTCTTTCTGTATTA-CTAAGAAC---ACTCTC 1684 Query 11141 TTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGTGCCACTCGATCGCCTCTTTT 11200 | |||| | | | | | | ||||||||| | |||||| || ||||| ||| || Sbjct 1683 AATCATTTCGGTACAAGCAATTCTTTCAAAAACCAATTGTGCTACCCGATCTCCT---TT 1627 Query 11201 AATATTAAATGTATTTTTACTATTA----TTAATAAATATAACTCCAATGTTACCCCTAT 11256 | | |||| ||| | || | | | |||| || || || | ||| || || |||| Sbjct 1626 ACTGATAAA-GTAATCTTGGTTTGAAAAATTAAACAAAATTACACAAATATTGCCTCTAT 1568 Query 11257 AATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACC 11316 |||| ||||| ||| || ||||| | ||| || ||||||| | | | || || | Sbjct 1567 AATCACAATCTACAACACCGCCTCCAACATCAATACCATAATTCCAAGCTAATCCCGATC 1508 Query 11317 TTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATCAGTTTTAA-CT 11375 |||| || |||| |||||| |||| ||| || || ||||||||||||||| || Sbjct 1507 TTGGAGCAATTCTTCCATATATATTTTGTGGTATTTCTAGTTTTATATCAGTTTTAATCT 1448 Query 11376 AAAA 11379 |||| Sbjct 1447 AAAA 1444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478251723925800