Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq17432 113 3e-20 seq669 113 3e-20 seq214 89.7 4e-13 >seq17432 Length=31749 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | | |||||||| | || ||||||||| | ||||||||||| Sbjct 23972 CCTCCTCTCAGACGGAGTACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 23913 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | ||||||||| ||||| |||| || |||||| |||| || Sbjct 23912 AGAGTGCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGGGAGGG 23853 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || ||| ||| | || || | ||| |||||| | ||| || Sbjct 23852 ATGCCCTCTTTGTC-CTGAATCTTGGCCTTCACGTTCTCAATGGTGTCGGAGGGCTCCAC 23794 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || ||||||||||| | |||||||| |||||||||||||| Sbjct 23793 CTCAAGGGTAATGGTTTTTCCGGTCAACGTTTTCACGAAAATTTGCATTTT 23743 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | || ||||||||| | || |||||||| | || || |||| ||| Sbjct 24574 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAATCGGAAAGAGTGCGCCCGTCTTCC 24515 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 || ||||||||||| || |||| || ||||| |||| || | |||||||| || | Sbjct 24514 AACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGTCGGGAGGGATGCCTTCTTTATCTTGG 24455 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || | || || | ||| |||||| | ||| || || | ||||| |||||| Sbjct 24454 ATTTTGGCCTTAACGTTCTCAATGGTGTCGGAGGGCTCCACCTCAAGGGTTATGGTTTTT 24395 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| ||||| || ||||| ||||||||| Sbjct 24394 CCGGTCAGAGTCTTAACAAAGATTTGCATT 24365 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | | |||||||| | ||| ||||||||| | ||| || || || Sbjct 24820 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAGTCAGAG 24761 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || |||| || | |||||||||||| || || | ||||||||||| | || Sbjct 24760 AGTGTTCGGCCGTCTTCTAGTTGTTTGCCGGCGAAGATAAGACGCTGTTGATCCGGAGGA 24701 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| ||||| || ||| || | | || || | ||| ||||| | ||| || Sbjct 24700 ATACCCTCTTTGTC-CTGAATTTTCGCCTTCACGTTCTCAATGGTGTCCGACGGCTCCAC 24642 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || |||||||| | ||||| || || ||||||||| Sbjct 24641 TTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTGACGAATATTTGCATT 24593 >seq669 Length=42814 Score = 113 bits (124), Expect = 3e-20 Identities = 151/207 (73%), Gaps = 11/207 (5%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | |||||||| || | || ||| |||| || || |||||||| ||||| Sbjct 32332 CTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGTCCGTCTTCTAACTGTTTGCCCGCAAA 32391 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||||| ||| ||||| | || | |||||||| || |||| |||||| || | Sbjct 32392 TATCAATCTCTGCTGATCCGGAGGAATGCCTTCTTTGTC-CTGAA----TCTTTGCCTTT 32446 Query 43038 GC-----CAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTT 43092 | | | ||||| | |||||| || | || ||||| |||||||| || ||| Sbjct 32447 ACATTTTCGATAGTGTCAGAGGGCTCGACCTCAAGAGTGATAGTCTTTCCGGTGAGGGTT 32506 Query 43093 TTCACAAAAATTTGCATTTTCT-TAAT 43118 |||||||| ||||||||||||| |||| Sbjct 32507 TTCACAAATATTTGCATTTTCTGTAAT 32533 >seq214 Length=17119 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/237 (69%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 ||||||| | |||||| | ||||||||| | || ||||||||| | ||||||||| Sbjct 954 CGCCTCCTCTCAGTCTCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGC 1013 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | || | |||| || ||||||||||| ||||| ||||| ||||| ||||| | | Sbjct 1014 TAAGAGTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAGATCAACCGCTGCTGATCCGGAG 1073 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGC-----CAACTGTGTCGCCAGC 43055 | | || || || || ||| | |||||| || | | ||| || |||| | Sbjct 1074 GTATGCCCTCCTTGTC-CTG----AATCTTTGCCTTTACATTCTCAATAGTATCGCTGGG 1128 Query 43056 CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 ||| || || | || || || || || || | || || || || ||||||||||| Sbjct 1129 CTCCACCTCAAGAGTGATGGTCTTACCCGTCAACGTCTTGACGAAGATTTGCATTTT 1185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381107711708010