Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11840 199 5e-46 seq12913 104 3e-17 seq4930 96.9 5e-15 seq43315 89.7 7e-13 >seq11840 Length=1854 Score = 199 bits (220), Expect = 5e-46 Identities = 442/667 (66%), Gaps = 10/667 (1%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||| ||||| || | |||| ||| | || |||||||| || || || || | Sbjct 726 ACCTGAAACTCTCCGGAGAGGACTCGACGGGAATATATATTACTAGTGTAGGGCTCTATC 785 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||| || || || || || || || || || |||||||| || |||| | ||| Sbjct 786 GACTCATTGTTGCCTAATATCTGTGCCGTAGAAGCGGTCGGCATCGGAGCCAACGTAAGA 845 Query 71263 CTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCC 71322 ||||| | | |||| | ||| || || || || |||||||||| || || Sbjct 846 CTATTACGTACTCCATATTTGGCGATCTTTTCCTTAAGTTCGGCCCAATTCCAGAGTTCA 905 Query 71323 GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCA 71382 | ||| || || ||| | || ||| || Sbjct 906 GTTGGCGTTCGGTCCCACATATCGTATTGAAGAATACCTTTAGAGACCGGCGAACCTTCA 965 Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 ||||| || || ||||| | || || | ||||||||| ||||| || || || ||| Sbjct 966 TATGTCTCATAAGGTCCCAACTCTTTAGCCAATTCACAACTGGCCTCCAAAGCGCCGTAA 1025 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 || ||||| || ||||||| |||| || || ||||| || || ||||| || | | Sbjct 1026 TATATGGTCTCAAAAATCTGGATATTAAGTCGTTTCGCTTCTGGACTTTCAAAGGGCTGA 1085 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | |||||||| ||| || || || ||||| ||||||||||| |||| ||||||| Sbjct 1086 CGCATAAGAATAAAACAGTCGGCCAAACCCTGAACTCCAATACCGATGGGTCGGTGTCTC 1145 Query 71563 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 |||||||| || | ||| || | |||||| || |||| || || |||||||||||| Sbjct 1146 TTATTAGAGCGCTCTGTTTCCGGCACAGGATAGTAGTTAAGGTCAATGATTTTATTGAGA 1205 Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATC-----AAATCTCCCAT 71677 ||||| || ||||| |||| || || ||||| |||||| | | ||||| | Sbjct 1206 TTTCTTGTGATAACTTTAGCCACTTCTTTGAGTTTCGCAAAATCGAAGGACAGCTCCCTT 1265 Query 71678 CTATT-ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA--TTAG 71734 | || || || ||||| |||| || |||| ||| || || || | |||| || | Sbjct 1266 TTGTTGACGAATCGATTCAAAGCAATTGACGCCAAATTGCAGACTGCGATCTCATCTTTG 1325 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | || | || ||||| ||||| | || ||||| |||||||| ||||||| Sbjct 1326 GA--CGAGTACTCAATTATTTCTGTGCATAAGTTCGAGCACTTAATGGTTCCCAAATTTT 1383 Query 71795 GTTGATT 71801 ||||||| Sbjct 1384 GTTGATT 1390 Score = 113 bits (124), Expect = 6e-20 Identities = 223/325 (69%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 71833 ATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 71892 ||| | ||| | || ||||| ||||| | || | || | | ||||| | ||||| Sbjct 1477 ATATATGGATTTCCTGTTTCGATCTGTGCCTCCACTATAGAATACCAGAGTTGTTGAGCC 1536 Query 71893 TTTA-TTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTC 71951 | | || | || || || |||||| |||| |||| | |||||||||||| || || Sbjct 1537 CTAACTTGTCTT-TTATACTTCTTTTGGTTTTCATATTTTTCATATAATCGTTCAAATTC 1595 Query 71952 GTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCC 72011 || |||||| | || | ||| ||||| || | |||||||||| ||||||| | Sbjct 1596 TTCGCCCCAACAGTCGTGAAGTCCGGGACACTCGTGTGGACACATCAGTGACCACATTTG 1655 Query 72012 ATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAATAGATCTC 72070 || | | ||| || |||||| || || ||||||||||| || || ||| ||||||| Sbjct 1656 GTCTGCCTCTACGCGACGCATAAACAGGTCCGGAATCCAAAG-GCCATAAAACAGATCTC 1714 Query 72071 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 72130 ||| ||| |||| || ||| || || || | | ||| | |||| | | || | Sbjct 1715 TGGCTCTTAGCTCTTCTGATCCGGTGTTTTTCCTTAAATCTAAGAACTGGAACACGTCTG 1774 Query 72131 AATGCCACGGTTCCAAGTATATGGC 72155 |||||||| |||| ||||||||| Sbjct 1775 CGTGCCACGGCTCCAGGTATATGGC 1799 >seq12913 Length=27019 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 41743 ATGATTGTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAA 41802 ||||| |||| | | |||||| || |||| || || ||||| || ||||| || || Sbjct 26882 ATGATCCTCTTTGTTGGCCATAACACCACTTTTCTGATACTCACCGACCCGTTTCTCAAA 26941 Query 41803 AAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 41854 ||||| ||||||||||||||||| || | |||||||||||||||||||||| Sbjct 26942 GAAATTGGTCTTTCCTTCCAATGAAATTTGTTCCATGAAATCAAACGGATTG 26993 >seq4930 Length=2674 Score = 96.9 bits (106), Expect = 5e-15 Identities = 306/465 (66%), Gaps = 12/465 (3%) Strand=Plus/Plus Query 72442 GAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA 72501 || ||||| || ||||| ||||||| || || || || || || || | || || Sbjct 1 GACGCGTGAGTGAACCACCGCTCAGACATCAGGTTATATGTTTCGATGGCAGCGTCGATG 60 Query 72502 TCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATC 72561 ||| || || || || | ||| | ||| | |||||| ||||||| ||| || || Sbjct 61 TCCTCCGCGTGAATACCGACGGAGACTCTCATCAGCATATGTTGAGGTCGTTCCACAATT 120 Query 72562 TTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA- 72620 ||| || ||||||||||| || | | || || || ||||| ||||| || ||||| Sbjct 121 TTGCCGTTGATTTTCAACAAATAACTTCTCTCTAATGTCTTAAATCCAAAGTAATTGTAG 180 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAA---C 72677 |||||| |||| || ||||| || | || || ||| ||| || ||| | || | Sbjct 181 TGAAAA-TCTCTGTCATAAATGATGGCAGAGTTTAGTCGTTCCGAATGTTTTTCAATCAC 239 Query 72678 TATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAA-CAT 72736 | ||| || || | || || || || | | | || | | ||| ||| Sbjct 240 TTTATAGATC-TGGTCG--GAGATCATAGGCGTCGGCATTCCTGTCCTCTCGTTATGCAT 296 Query 72737 AGTTGA-ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 72795 || | | || || | || || ||| || ||||| || || |||||||||||| Sbjct 297 --TTCATACAAGTCTTTGATGACATCAGAGAAGTTCTTTTTGGTCTCTTTGTGTAGATTT 354 Query 72796 GATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCT 72855 || || |||||||||| || || | || ||||| | |||| ||| || ||||| Sbjct 355 GAGACCACTATTCTGGCCGCGAGTTTCGCGTAATCCGCGTGTTTTGTGGTCATTGTGGCC 414 Query 72856 GCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 72900 |||||||| || |||| ||||||| || || ||||||||| Sbjct 415 GCTATTTCGGCGGCCAATTCATCCAATTTGACAGTCGTTACTCCA 459 >seq43315 Length=222 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 72163 CCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 72222 || ||||||||||| |||||||| |||| |||| |||||| || |||||||||| | | Sbjct 75 CCGGGCCGTTTGTTCCCTCCCTGGTCTACATATCGAGCGGTATTGTTATAAACTCGAAGC 134 Query 72223 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 72282 || |||| | ||||||||||| || || || |||| ||| || | || |||||| Sbjct 135 ATAGGAACCAAACCATTGGATGTGCCGTTAGTGCCGGCGATGTAAGTGCCCGCCGCACGA 194 Query 72283 AT 72284 || Sbjct 195 AT 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670666508272200