Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq55467 484 2e-132 seq54837 185 2e-42 seq55492 163 7e-36 seq55042 141 2e-29 >seq55467 Length=2484 Score = 484 bits (536), Expect = 2e-132 Identities = 801/1148 (70%), Gaps = 11/1148 (1%) Strand=Plus/Plus Query 1036 AGGTGAATGCCTCAAACCTGAACCGTCCGGAGGATGGTGCCCGCTTCGAGCCGTTGATCG 1095 |||| |||||||| ||| | |||||||| ||||| ||||| |||||||| | || | Sbjct 1 AGGTTAATGCCTCCAACATAAACCGTCCCATCGATGGGGCCCGTTTCGAGCCACTAATTG 60 Query 1096 GCAACCCCGGGGACGGGGCATCACCGCACTGCGCAATAGTTGACGAATACCACGAACACC 1155 |||||||||| || ||||| || || || || || | || |||| ||| |||||| Sbjct 61 GCAACCCCGGCGATGGGGCTTCTCCTCATCTTGCCATTATCGATGAATTCCATGAACACG 120 Query 1156 CTACGGAT-GCGCTCTACA-CA-ACAATGCTTACAGGTATGGGCGCGCGCCGACAGCCGC 1212 | || || ||| | || |||||| | || ||||||||||| || | || |||| Sbjct 121 AAA---ATAGCAATCTTTATCACACAATGTTGACCGGTATGGGCGCCCGGCAGCAACCGC 177 Query 1213 TGATGTGGGCAATAACCACGGCGGGCTACAACATCGAGGGGCCGTGTTACGACAAGCGAC 1272 | || ||| | || || || || | ||||||| || || ||||| |||||||| | Sbjct 178 TTATCTGGAGTGTGACGACAGCCGGTAATGACATCGAAGGTCCCTGTTATGACAAGCGCC 237 Query 1273 GCGAAGTGATTGAGATGCTGAACGGATCGGTGCCGAACAACGAACTTTTTGGCGTGATTT 1332 | ||||| ||||| ||||| | | ||||| ||| ||||| | ||||| | |||| Sbjct 238 GGGAAGTCATTGATATGCTAACCCAGGTAGTGCCCAACGACGAATTATTTGGGTTAATTT 297 Query 1333 ACACGGTTGATGAAGGGGATGACTGGACAGATCCAAAAGTGCTGGAGAAAGCAAACCCGA 1392 |||| | ||||| || || || ||||| | ||| | || ||||| || || | Sbjct 298 ACACCCTCGATGAGGGAGAGGATTGGACCCAGCCAGCCGCCCTCAGCAAAGCCAATCCCA 357 Query 1393 ACATTGGGGTGTCAGTATACCGTGACTTCCTTCTCAGTCAGCAACAGCGTGCTATTAACA 1452 |||| || || || | |||| ||| || || || || || ||||| || || || |||| Sbjct 358 ACATGGGCGTCTCTATTTACCCTGATTTTCTGCTAAGCCAACAACAACGAGCCATCAACA 417 Query 1453 ATGCCCGCCATGCGGGTGTGTTCAAAACGAAGCATCTCAATGTATGGGTTGCCGCCCGCA 1512 ||||| | || || | || ||||| || || |||||| | ||||| | || || Sbjct 418 ATGCCAGACAAGCCAACGCCTTTAAAACCAAACACCTCAATATCTGGGTGTCAGCACGTT 477 Query 1513 CAGCATTCTTTAATCTGGTTTCCTGGCAAAACTGTGAGGATAAGACGCTGACGCTGGAAC 1572 | || ||||| || |||| ||||| ||||| || | | ||||| |||| | Sbjct 478 CGGCTTTCTTCAACATGGTGAACTGGCGCGCTTGTGAAGACACCAGCCTGACTTTGGATC 537 Query 1573 TGTTTGAGGGTCAACCCTGCGTACTGGCGTTCGATCTGGCTCGTAAGCTGGACATGAACA 1632 || || || ||| |||| | | ||| ||| |||| || ||||| || ||||| | Sbjct 538 AATTCGAAGGACAAGCCTGTTATTTAGGGTTTGATTTGGCGCGCAAGCTAGATATGAATA 597 Query 1633 GCATGGCGAGGTTATTTACCCGTGAAATAGACGGGAAAACG-CATTTTTACAGCGTGGCG 1691 ||||||| | | |||| |||||| || || |||||||| |||| |||||| | || Sbjct 598 GCATGGCCCGCGTGTTTATCCGTGAGATTAAC-GGAAAACGTCATTATTACAGTATTGCC 656 Query 1692 CCACGTTTCTGGGTGCCGTATGACACGGTCTACAGTGTTGAGAAAAATGAGGATCGCCGT 1751 || | ||||||||||| || |||| || ||||||| || | | | ||||| || Sbjct 657 CCTAGGTTCTGGGTGCCTTACGACAGCGTGTACAGTGCAGATACCA---ACGATCGTCGC 713 Query 1752 ACTGCGGAACGTTTTCAGAAATGGGTTGAAATGGGCTTTTTGACAGTAACTGATGGTGCG 1811 || |||||||| ||||| || ||||| | ||| | | | | || || || || Sbjct 714 ACAGCGGAACGATTTCAAAAGTGGGTCAATATGCACCAGCTAATCGCGACCGACGGGGCA 773 Query 1812 GAGGTGGATTACCGCTACATCCTTGAAGAGGCCAAAGCTGCGAACAAACTGAACCCGGTC 1871 || || || ||||| || ||||| ||||| || || || || ||| || ||||||||| Sbjct 774 GAAGTTGACTACCGGTATATCCTCGAAGAAGCAAAGGCCGCTAACTGTCTTAACCCGGTC 833 Query 1872 AGCGAATCCCCCATTGATCCATTTGGTGCCACCGGGCTTTCACATGATCTAGCTGATGAA 1931 |||| | || ||||| ||| ||||| || || ||| | | || || || Sbjct 834 GTGCAATCAGCGATCGATCCTCATGGCGCCACTGGCCTGAGTCATCAGTTGGCCGACGAG 893 Query 1932 AACCTGAATCCCGTCACTATCATCCAGAATTACACCAACATGTCCGATCCGATGAAAGAA 1991 | || || || ||||| || ||||| |||||||| | ||||| ||| | ||||||||| Sbjct 894 CAACTTAACCCTGTCACCATTATCCAAAATTACACGCATATGTCAGATGCCATGAAAGAA 953 Query 1992 CTGGAAGCGGCGATTGAATCGGGTCGCTTTCATCATGACGGCAATCCCATCATGACCTGG 2051 ||||||| || |||||||| || |||||||| || || || | ||||||||||||||| Sbjct 954 TTGGAAGCCGCCATTGAATCTGGCCGCTTTCACCACGATGGTCACCCCATCATGACCTGG 1013 Query 2052 TGTATCGGCAACGTGGTCGGCAAAACCATTCCGGGTAACGATGACGTGGTGAAGCCTATT 2111 || ||| |||||||||| || ||| | ||||||||||||||| | || || || Sbjct 1014 TGCATCAGCAACGTGGTGGGTAAACATGTGCCGGGTAACGATGACATTGTTCGCCCGATA 1073 Query 2112 AAGGAGCAGGCGGAAAATAAAATCGATGGTGCAGTTGCACTGATTATGGCGGTTGGCAGA 2171 || || |||| ||||| ||||| || || || || ||| | || ||||| ||||| | Sbjct 1074 AAAGAACAGGAAGAAAACAAAATTGACGGCGCCGTCGCATTAATCATGGCAGTTGGTCGG 1133 Query 2172 GCCATGCT 2179 || ||||| Sbjct 1134 GCAATGCT 1141 >seq54837 Length=669 Score = 185 bits (204), Expect = 2e-42 Identities = 216/292 (74%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 8703 AACGTTTCACGACGACTGAACAGCAGACGTTACTTTCCCACGGTGTGGCAACGGCGTATG 8762 ||||||| || |||||||||||| | | | |||| || | || ||||| || | Sbjct 324 AACGTTTTACCTTGACTGAACAGCAATCACTGTTAACCCATGGCATCGCCACGGCCTACG 265 Query 8763 TGGAAAGCGGCGTGCTGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATG 8822 | ||| |||| |||||| ||||| || || ||||| || ||| ||||||||| || | Sbjct 264 TAGAAGGCGGGCAGCTGCGGATTCAACGTGAAATCACCACCTACCAGAAAAATGCTTACG 205 Query 8823 GTGTGGCGGATAACAGCTACCTTGACAGCGAGACGCTGCATACCAGTGCTTATGTGTTGC 8882 | || ||||||||||| || |||||||| || |||||||||||||||||||| || Sbjct 204 GCAATGCTGATAACAGCTATCTGGACAGCGAAACCTTGCATACCAGTGCTTATGTGCTGA 145 Query 8883 GCCGTCTGAAATCTGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTA 8942 | || |||||| ||| || || || ||||| || || ||| | || ||||| || | Sbjct 144 GACGCCTGAAAAGTGTGATCACGAGCAAATATTCACGACACAAATTAGCCAATGACGGGA 85 Query 8943 CGCGTTTCGGGTCTGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGA 8994 |||| || ||| | || || ||||| ||||| |||| ||| || |||||||| Sbjct 84 CGCGCTTTGGGCCAGGGCAAGCCATCGTCACCCCTGTCGTCATTCGTGGTGA 33 >seq55492 Length=1043 Score = 163 bits (180), Expect = 7e-36 Identities = 286/414 (69%), Gaps = 2/414 (0%) Strand=Plus/Plus Query 540 GCTAATCAGTATGCCCGCAACGTTGTGCGGGGAAAAATCACGGCATGTCAGTATGTCATT 599 |||| |||||| ||||| | || || |||||||| | || || | ||||| || Sbjct 629 GCTACTCAGTACGCCCGTGAGGTGACCCGAGGAAAAATTATTGCCTGCCGCTATGTGATC 688 Query 600 CAGGCCTGCCAGCGTCACATTGATGATATGGCGGCGGAGAAGAGTAAAAGGTTTCGGT-A 658 ||||||| || ||||| | || ||| | | ||| || || || || |||| | | Sbjct 689 GAGGCCTGTCAACGTCATCTAGACGATTTAGTGGCTGAAAA-AGGAAGCCAATTCGCTTA 747 Query 659 CCGCTTTGATAAAGACATGGCTGAGAAAGCTGCAAAGTTTATTCAGTTACTTCCACATAC 718 || || || ||||| ||||| || ||||| ||||| || | | || || || Sbjct 748 TCGTTTCGACAAAGATCAAGCTGAACGCGCCGCAAAATTTATCCAAATGTTGCCTCACAC 807 Query 719 AAAAGGTGAATGGGCGTTCAAACGTATGCTGATTACCCTGGAACCGTGGCAACTTTTCAT 778 ||||| ||||||||||| ||||| || || || | | ||| ||||| | ||| || Sbjct 808 CAAAGGGGAATGGGCGTTTAAACGACAACTCATCACATTAGCACCCTGGCAGCGTTTTAT 867 Query 779 CGTGTGCTGTGCCTTTGGCTGGGTACAGAAGGGAACAAAGCTTCGTCGTTTTCGTGAGGT 838 | ||||||| |||||| ||| | | || || || | || || || ||||| || Sbjct 868 TATCTGCTGTGTCTTTGGTTGGATGCGAAAAGGCACCCGATTGCGCCGGTTCCGTGAAGT 927 Query 839 CTACACAGAGATACCACGTAAGAACGGGAAATCGGCTATTTCAGCTGGTGTAGCTCTCTA 898 ||||| || || || ||||| ||||| ||||| || || |||| ||||| || | | Sbjct 928 GTACACGGAAATTCCTCGTAAAAACGGTAAATCAGCGATCGCAGCCGGTGTCGCCTTGTT 987 Query 899 CTGTTTCACCTGTGATAACGAATTCGGTGCGGAAGTATACTCCGGCGCCACGAC 952 ||||| | |||||| |||||||||| || ||||| || |||||||| || || Sbjct 988 TTGTTTTTCTTGTGATGACGAATTCGGCGCTGAAGTCTATTCCGGCGCTACAAC 1041 >seq55042 Length=1078 Score = 141 bits (156), Expect = 2e-29 Identities = 359/545 (66%), Gaps = 31/545 (6%) Strand=Plus/Minus Query 9026 GAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGA-TAGTGGAGCGTAACGC 9084 ||||| || |||||||||||||||||||| ||||| | | | | || ||||| ||||| Sbjct 1078 GAAGGGATAGTGGAAAACTTCGATCTGTTT-AGCAAAAAGTTAATCGTAGAGCGCAACGC 1020 Query 9085 GAACGATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATCAGTTACGTGT 9144 | ||| | || || | ||||||||||| || |||||||| | || ||| | ||||| Sbjct 1019 CACCGACCCCAATCGTATAGATGTGCTGTTGCCCCCTGATTACATTAACCAGCTTCGTGT 960 Query 9145 GTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTATAGCGAGGA----GGCT-GCA------ 9193 |||||| ||||| || ||||| || ||||||||| ||||| | || ||| Sbjct 959 GTTTGCGGTGCTGAATCAGTTTCGGCTGCAGTATCAAGAGGAAGAGGACTAGCAATGATA 900 Query 9194 --------------TAATGGGAAAAATTGCGGGAACAACGTATTTCAAAATCGATGGACA 9239 ||||| || ||||| || || || |||||| | ||||| | Sbjct 899 AAAGGGAATAAAATAAATGGCTAAGATTGCCGGCACCTGTTACTTCAAAGTAGATGGGTA 840 Query 9240 GCAACTGTCGGTAACCGGAGGGATTGAAGTCCCCATGAACACCAAAGTTCGTGACGACGT 9299 || | || | || || || ||||||||||| |||||||| || | || || | Sbjct 839 TCAGTTATCTCTGACAGGGGGAATTGAAGTCCCGATGAACACAGTGGTCAGAGAAGATAT 780 Query 9300 GATTGGCCTGGATGGTTCCGTTGACTACAAGGAAACCAGCCGGGCACCGTATACGAAGGT 9359 || ||||||| || || || ||||| ||||| | |||| || | | || | Sbjct 779 CATCGGCCTGGCAGGGGATGTAGATTACAAAGAAACTTACAGGGCGCCTCACATAAAAGG 720 Query 9360 GACCGCCAAAGTGCCGAAAAACTTCCCGGTCGATAAAATTACGTCTTCTGA--TGTTATG 9417 || || ||||| |||||| |||||||| | || || | ||| Sbjct 719 AACGTTTAAGGTGCCAGCGCGCTTCCCTAAAGATAAAAT--CATCAGCTCAACCAGCATG 662 Query 9418 ACCATCACATCAGAGCTGGCAAATGGTCAGGTGTATGTTCTCTCAAACGCCTGGCTGCAC 9477 ||||||||| |||| |||||||| | ||| || || | ||| || |||||||| Sbjct 661 ACCATCACAGCAGAACTGGCAAACAGCATGGTTTACGTCTTATCAGGGGCTTGGCTGCAT 602 Query 9478 GGCGAAGCCAACCATAACCCGGAAGAGGGCACCGTGGATCTTGAGTTCCACGGTGAGGAG 9537 || ||||| || ||| | ||||| || | ||||| || || || || ||||| || Sbjct 601 GGTGAAGCGAATGTTAATGCCGAAGAAGGAAAAGTGGAGCTGGAATTTCATGGTGAAGAA 542 Query 9538 GGATT 9542 ||||| Sbjct 541 GGATT 537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128269317936790