Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_004348.1 Length=40679 Score E Sequences producing significant alignments: (Bits) Value seq6017 84.2 6e-12 seq54220 80.6 7e-11 >seq6017 Length=2206 Score = 84.2 bits (92), Expect = 6e-12 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1516 TTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAATTGA 1575 ||| | || || || ||||| ||||||||||| || |||| ||| || || ||||||||| Sbjct 124 TTGCTCTCGATATATATTCTGCCAATATATTCCCCCAGAACACCAATGCCAATCAATTGA 65 Query 1576 ACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTTCC 1634 | |||||| | ||||||| ||||| || | || ||||| || || || |||||| Sbjct 64 ATGCCACCTAAAAAAAGAATGGAAACCAGTAATGAAGGGTAACCCGGTACTGGATTTCC 6 >seq54220 Length=2006 Score = 80.6 bits (88), Expect = 7e-11 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1516 TTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAATTGA 1575 ||| | || || || ||||| ||||||||||| || |||| ||| || || ||||||||| Sbjct 124 TTGTTCTCGATATATATTCTGCCAATATATTCCCCCAGAACACCAATGCCAATCAATTGA 65 Query 1576 ACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTTCC 1634 | |||||| | ||||||| | ||| || | || ||||| || || || |||||| Sbjct 64 ATGCCACCTAAAAAAAGAATGGCAACCAGTAATGAAGGGTAACCCGGTACTGGATTTCC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129964183148490