Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq214 158 9e-34 seq17432 134 1e-26 seq669 122 6e-23 >seq214 Length=17119 Score = 158 bits (174), Expect = 9e-34 Identities = 178/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 ||| ||||||| ||| | || ||||||||||| || || ||||| |||||||||||||| Sbjct 955 GCCTCCTCTCAGTCTCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGCT 1014 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 ||| |||| |||||||||||||||||||||| | ||||| || || || || || Sbjct 1015 AAGAGTTCTGCCGTCTTCTAATTGTTTGCCAGCAAAGATCAACCGCTGCTGATCCGGAGG 1074 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 || || || ||||| ||| ||||| ||||||| | || || |||||||| || | Sbjct 1075 TATGCCCTCCTTGTCCTGAATCTTTGC-CTTTACATTCTCAATAGTATCGCTGGGCTCCA 1133 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15370 | || | || ||||| ||||| |||| || || || || |||||||| || ||| Sbjct 1134 CCTCAAGAGTGATGGTCTTACCCGTCAACGTCTTGACGAAGATTTGCATTTTGGAA 1189 >seq17432 Length=31749 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | || ||||||||||| || || ||||| ||||| |||||| Sbjct 24592 CCTCCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAATCGGAA 24533 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||||| || |||||||| ||| | |||| | |||||||||| || Sbjct 24532 AGAGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAGTCTTTGTTGGTCGGGAGGG 24473 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || |||||| ||| || | || ||||| ||| || || Sbjct 24472 ATGCCTTCTTTATCTTGGATTTTGGCCTTAACGTTCTCAATGGTGTCGGAGGGCTCCACC 24413 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| || |||||||| || ||||| |||||||| Sbjct 24412 TCAAGGGTTATGGTTTTTCCGGTCAGAGTCTTAACAAAGATTTGCAT 24366 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | || ||||||||||| || || ||||| |||||||||||| Sbjct 23972 CCTCCTCTCAGACGGAGTACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 23913 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | ||||||||| ||||||||| || | |||| | ||||||||| || Sbjct 23912 AGAGTGCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGGTCGGGAGGG 23853 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| ||| ||| ||| || | || ||||| ||| || || Sbjct 23852 ATGCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCGGAGGGCTCCACC 23793 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | |||||||||||| || |||| ||||| || ||||||||||| || Sbjct 23792 TCAAGGGTAATGGTTTTTCCGGTCAACGTTTTCACGAAAATTTGCATTTT 23743 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | || | || ||||||||||| || || ||||| || ||||| ||| Sbjct 25048 CCTCCTCTGAGTCGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATATTGTAGTCGGAA 24989 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||||| | ||||||||||||| | ||||| ||||| || || ||| Sbjct 24988 AGAGTGCGCCCGTCTTCCAGTTGTTTGCCAGCGAAGATCAATCGTTGCTGATCCGGAGGA 24929 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| || ||||||| | || ||||| || || || Sbjct 24928 ATCCCTTCTTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTGTCCGACGGCTCCACT 24869 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||| || || || || |||||||| Sbjct 24868 TCCAAAGTGATGGTCTTTCCGGTCAATGTCTTCACGAATATTTGCAT 24822 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | || |||||||| || || || ||||| || || ||||| Sbjct 24364 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTCGACTCCTTTTGAATATTATAATCAGAG 24305 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| ||||||||| ||||||||| || | |||| | ||||| || ||| Sbjct 24304 AGTGTTCGGCCGTCTTCTAGTTGTTTGCCCGCAAAGATCAGTCTCTGTTGATCCGGAGGA 24245 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| |||||| | || ||||| || || || Sbjct 24244 ATACCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATGGTGTCCGACGGCTCCACT 24185 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || || |||||||| || || || || ||||| Sbjct 24184 TCCAAAGTAATTGTCTTTCCGGTCAGAGTCTTGACGAATATCTGCAT 24138 >seq669 Length=42814 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | ||||||||||||||| || || || || ||||||||||| Sbjct 32297 CCTCCTCTCAAACGAAGAACTAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAG 32356 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | |||||||||| |||||||| || ||||||| | || || || ||| Sbjct 32357 AGAGTGCGTCCGTCTTCTAACTGTTTGCCCGCAAATATCAATCTCTGCTGATCCGGAGGA 32416 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||| ||||| ||||||| |||| || || || || || Sbjct 32417 ATGCCTTCTTTGTCCTGAATCTTTGC-CTTTACATTTTCGATAGTGTCAGAGGGCTCGAC 32475 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || || || || || || || ||||| ||||| |||||||| || Sbjct 32476 CTCAAGAGTGATAGTCTTTCCGGTGAGGGTTTTCACAAATATTTGCATTTT 32526 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | |||||||||||||| || |||||||| ||||||||||| Sbjct 31843 CCTCCTCTCAAACGAAGGACTAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAG 31902 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | |||| ||||| |||||||| || | || | | ||||| || ||| Sbjct 31903 AGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGGA 31962 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||| ||||| ||| || |||| ||||||||| || || Sbjct 31963 ATGCCTTCCTTGTCCTGAATCTTTGC-CTTAACGTTTTCGATGGTATCGGAGGCCTCCAC 32021 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || || || || ||||| || || |||||||| Sbjct 32022 TTCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTCACGAATATTTGCAT 32069 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | ||| ||||| || || || || || || ||||||||||| Sbjct 31615 CCTCCTCTCAAACGAAGAACCAAATGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGAG 31674 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | |||| ||||| |||||||| || | || | | ||||| || ||| Sbjct 31675 AGAGTGCGGCCGTCCTCTAACTGTTTGCCCGCAAAGATAAGTCTCTGTTGATCCGGAGGA 31734 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||| ||||| ||| || |||| |||||||| | || || Sbjct 31735 ATACCTTCCTTGTCCTGAATCTTTGC-CTTCACGTTTTCGATGGTATCCGAAGCCTCCAC 31793 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| || || || || || || || || || ||||| Sbjct 31794 TTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAATATCTGCAT 31841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361930489845645