Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq16235 248 3e-61 seq55013 178 5e-40 seq54514 89.7 2e-13 >seq16235 Length=3480 Score = 248 bits (274), Expect = 3e-61 Identities = 201/240 (84%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 51076 TGGTAACTTAGACGCCCATCTGACACAGACGGACATCTAAGTATGGAATTACAGGA--CT 51133 |||||||||||||||||| || |||||||||||||||||||||||| || | | || Sbjct 5 TGGTAACTTAGACGCCCACTTGT-ACAGACGGACATCTAAGTATGGAA--ACCGAATCCT 61 Query 51134 GGCGAAAAGAACCTCGTAAAAAGTATTCGAATGAATTCAAACTTCGTATGGTTGAACTGG 51193 ||||||||||||| ||||| || ||||||||||| ||||| || |||||||||||||||| Sbjct 62 GGCGAAAAGAACCCCGTAAGAATTATTCGAATGATTTCAAGCTCCGTATGGTTGAACTGG 121 Query 51194 CATCACAACCTGGAGCTTGTGTTGCACAGATTGCACGAGAAAATGGCGTCAATGATAATG 51253 | || | || ||||| || ||||| |||||||| || ||||| |||||||||||||| | Sbjct 122 CTTCCCGTCCCGGAGCCTGCGTTGCTCAGATTGCCCGTGAAAACGGCGTCAATGATAACG 181 Query 51254 TTATTTTCAAATGGCTCAGGCTCTGGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGG 51313 | || ||||||||||| ||||||||||||| ||||| || | ||||| || ||||||| Sbjct 182 TCATCTTCAAATGGCTGCGGCTCTGGCAGAATGAAGGCCGCATATCGCGCCGCCTTCCGG 241 >seq55013 Length=475 Score = 178 bits (196), Expect = 5e-40 Identities = 296/434 (68%), Gaps = 33/434 (8%) Strand=Plus/Minus Query 5558 ATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGACGGGCACAC 5617 || ||||| ||||| || |||||| || || ||||| || || |||| |||||||| Sbjct 403 ATTCGCTCAGCTTCGTCTGGGTCATAAATCCCCGCAAACCCAAATGCCAAGCGGGCACAT 344 Query 5618 TGAATCATGGCTTTATGCCGTAACATCCGTTTGGGATGCGACTGCCACGGCCCGGTGATT 5677 ||||||||||||||||| |||||||| || || ||||| ||||| || || || Sbjct 343 TGAATCATGGCTTTATGGCGTAACATGCGCTTTGGATGACTGTGCCATGGGCCTGTA--- 287 Query 5678 TCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCATTCGGTAACG 5737 || ||| || ||||| ||| |||| || || Sbjct 286 ------------------------GG---GCGTCGACATTCCGTCATGAATTCAGTGACT 254 Query 5738 CAGATCGGATGATTACGGTCCTTGCGGTAAATCCGGCATGTACAGGATTCATTGTCCTGC 5797 | | ||||||| ||||| || ||||| || ||||| || |||| | || ||| ||| Sbjct 253 TCGGTAGGATGATGGCGGTCTTTTCGGTAGATACGGCAGGTGCAGGCCTGATCGTCTTGC 194 Query 5798 TCAAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGGGACCAGCCATCAACG 5857 | ||| |||||||||||| || | |||||| || |||||||| ||||| ||||||| | Sbjct 193 TGAAACGTCATGCCATCAAAGTGTTCGTTTTCGTTAATGATGCGTGACCAACCATCAATG 134 Query 5858 CCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCAC 5917 || || ||||| ||||| ||| ||||| || || ||||||||||| || || | Sbjct 133 CCAACGACCGGCACGAT---GTTACCTTTATCGGGAAAAGCGTAAATTTCCTTGGTAAAG 77 Query 5918 GGATTAAGGCCGTACTGGTTGGCGACGATCAACAATGCGATGAACTGCGCATCGCTGGCA 5977 ||||| ||||| || || |||| || || | || || | || || | || | || Sbjct 76 GGATTGAGGCCATATTGACTGGCAACAATTAGCAGAGCAGTCAATTGTTCTTCCGTCACA 17 Query 5978 TCGCCTTTAAATGC 5991 | ||| |||||||| Sbjct 16 TTGCCCTTAAATGC 3 >seq54514 Length=2452 Score = 89.7 bits (98), Expect = 2e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 51130 GACTGGCGAAAAGAACCTCGTAAAAAGTATTCGAATGAATTCAAACTTCGTATGGTTGAA 51189 |||||||||| ||| | || | | ||||| || || || ||||||||||| |||||| Sbjct 100 GACTGGCGAACTGAATCACGCACAGTCTATTCCAACGACTTTAAACTTCGTATCGTTGAA 159 Query 51190 CTGGCATCACAACCTGGAGCTTGTGTTGCACAGATTGCACGAGAAAATGGCGTCAATGAT 51249 ||||| || || || ||||| ||| ||| | || || ||||||| | ||| | | Sbjct 160 CTGGCTTCTCACCCCGGAGCCAATGTCGCAAAAATCGCGAGAGAAAACGACGTTGCTCAC 219 Query 51250 AATGTTATTTTCAAATGGCTCAGGCTCTGGCAGAACGAAGGGCGTGTTTCGCGGCGTCTT 51309 || | ||||| || ||||| | | ||||| |||||||| || | || || || || Sbjct 220 AACCTCATTTTTAAGTGGCTGCGCATGTGGCAAAACGAAGGCCGGATATCTCGCCGCCTG 279 Query 51310 CC 51311 || Sbjct 280 CC 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185130446859880