Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq55013 181 4e-41 seq22457 134 6e-27 seq36628 114 5e-21 seq39681 111 6e-20 seq54883 105 3e-18 seq11509 100 1e-16 seq55168 89.7 2e-13 >seq55013 Length=475 Score = 181 bits (200), Expect = 4e-41 Identities = 279/404 (69%), Gaps = 33/404 (8%) Strand=Plus/Minus Query 38631 GCAGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAG 38690 |||||| ||| | || ||||| ||||| || |||||| || || ||||| || || Sbjct 418 GCAGTACCTTCTATGATTCGCTCAGCTTCGTCTGGGTCATAAATCCCCGCAAACCCAAAT 359 Query 38691 GCCAGACGGGCACACTGAATCATGGCTTTATGCCGTAACATCCGTTTGGGATGCGACTGC 38750 |||| |||||||| ||||||||||||||||| |||||||| || || ||||| ||| Sbjct 358 GCCAAGCGGGCACATTGAATCATGGCTTTATGGCGTAACATGCGCTTTGGATGACTGTGC 299 Query 38751 CACGGGCCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCC 38810 || ||||| || || ||| || ||||| | Sbjct 298 CATGGGCCTGTA---------------------------GG---GCGTCGACATTCCGTC 269 Query 38811 ATCCACTCGGTAACGCAGATCGGATGATTACGGTCTTTGCGGTAAATCCGGCATGTACAG 38870 || | || || || | | ||||||| |||||||| ||||| || ||||| || ||| Sbjct 268 ATGAATTCAGTGACTTCGGTAGGATGATGGCGGTCTTTTCGGTAGATACGGCAGGTGCAG 209 Query 38871 GATTCATTGTCCTGCTCAAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGG 38930 | | || ||| |||| ||| |||||||||||| || | |||||| || |||||||| Sbjct 208 GCCTGATCGTCTTGCTGAAACGTCATGCCATCAAAGTGTTCGTTTTCGTTAATGATGCGT 149 Query 38931 GACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAA 38990 ||||| ||||||| ||| || ||||| ||||| ||| ||||| || || |||||| Sbjct 148 GACCAACCATCAATGCCAACGACCGGCACGAT---GTTACCTTTATCGGGAAAAGCGTAA 92 Query 38991 ATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGAT 39034 ||||| || || | ||||| ||||| || || |||| || || Sbjct 91 ATTTCCTTGGTAAAGGGATTGAGGCCATATTGACTGGCAACAAT 48 >seq22457 Length=815 Score = 134 bits (148), Expect = 6e-27 Identities = 122/148 (82%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 31336 TGAGTTGACTGGTCATGATGAC--CTCCTTATTTGTTT-AGTTTATAACCGCCAGTTAGT 31392 ||| |||| | | ||||||| |||||| | ||||| ||| | | ||||||| ||| Sbjct 670 TGATTTGAGTCGCCATGATGGGTGCTCCTTTTGTGTTTTAGTGTC--AGCGCCAGTCAGT 727 Query 31393 AGCTGGCGGTCGGGTGTCAACTG-AGCCAAATAAGAAGCTCTGGGCATATTCCCCTTGCG 31451 |||||| | ||||||||||||| ||||| | |||| |||| |||||||||||||||||| Sbjct 728 AGCTGGTGC-CGGGTGTCAACTGGAGCCACAAAAGATGCTCCGGGCATATTCCCCTTGCG 786 Query 31452 GGTGTTGTATTACGCCTCTCCACCCGAC 31479 ||| |||||||||||||||||||||||| Sbjct 787 GGTCTTGTATTACGCCTCTCCACCCGAC 814 >seq36628 Length=791 Score = 114 bits (126), Expect = 5e-21 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 49602 CCTCATACTCTGGACAGAACGAGGCGCAGCCCGTCACGCAAAAATGCTCGAAACTGATCA 49661 ||| || ||||||||||||||||||||||| |||||| | |||||||| ||||| |||| Sbjct 577 CCTTATTCTCTGGACAGAACGAGGCGCAGCACGTCACACCAAAATGCTAGAAACCAATCA 518 Query 49662 GGCGTGGGATGTGTTCGAAAAACTGGAAGACTGCTATTTCA 49702 ||| ||||| ||||||||||| | ||||| || ||||||| Sbjct 517 GGCATGGGAAGTGTTCGAAAAGTTAGAAGATTGTTATTTCA 477 >seq39681 Length=3370 Score = 111 bits (122), Expect = 6e-20 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 49602 CCTCATACTCTGGACAGAACGAGGCGCAGCCCGTCACGCAAAAATGCTCGAAACTGATCA 49661 ||| || |||| |||||||||||||||||| |||||||| |||||||| ||||| ||||| Sbjct 54 CCTTATTCTCTAGACAGAACGAGGCGCAGCACGTCACGCCAAAATGCTAGAAACCGATCA 113 Query 49662 GGCGTGGGATGTGTTCGAAAAACTGGAAGACTGCTATTTCA 49702 || ||||| || |||||||| | ||||| || ||||||| Sbjct 114 AGCATGGGAAGTATTCGAAAAGTTAGAAGATTGTTATTTCA 154 >seq54883 Length=869 Score = 105 bits (116), Expect = 3e-18 Identities = 82/94 (87%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 31387 GTTAGTAGCTGGCGGTCGGGTGTCAACT-GAGCCAAATAAGAAGCTCTGGGCATATTCCC 31445 || |||| |||||| |||||||||||| |||| || ||| |||| |||||||||||| Sbjct 777 GTCAGTAACTGGCGC-CGGGTGTCAACTAGAGCACCAT-AGACGCTCCGGGCATATTCCC 834 Query 31446 CTTGCGGGTGTTGTATTACGCCTCTCCACCCGAC 31479 ||||||||| |||||||||||||||||||||||| Sbjct 835 CTTGCGGGTCTTGTATTACGCCTCTCCACCCGAC 868 >seq11509 Length=51200 Score = 100 bits (110), Expect = 1e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 52499 GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 52557 ||||| |||||||||| ||| ||||| |||||||||||||||| |||||||||||| || Sbjct 31927 GGCCCCTTAGCTCAGTTGGTTAGAGCAAGCGACTCATAATCGCTGGGTCGCTGGTTCGAA 31986 Query 52558 TCCAGCAAGGGCCACCA 52574 ||||||| ||||||||| Sbjct 31987 TCCAGCAGGGGCCACCA 32003 >seq55168 Length=2163 Score = 89.7 bits (98), Expect = 2e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 49591 AAAGCCCGCTCCCTCATACTCTGGACAGAACGAGGCGCAGCCCGTCACGCAAAAATGCTC 49650 ||| | ||||| || || || ||||| | ||| | ||||| || || || |||||||| Sbjct 1961 AAAACACGCTCACTTATTCTGTGGACCGGACGTGAGGCAGCACGCCATGCCAAAATGCTA 2020 Query 49651 GAAACTGATCAGGCGTGGGATGTGTTCGAAAAACTGGAAGACTGCTATTTCA 49702 ||||| ||||| || ||||| ||||||||||| | ||||| || ||||||| Sbjct 2021 GAAACCGATCAAGCTTGGGAAGTGTTCGAAAAGTTAGAAGATTGTTATTTCA 2072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200396692087515