Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achipteria_20coleoptrata_20[genbank_20GCA_5F000988765.1_202015-05- 06] 56,345 sequences; 88,443,889 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq54669 201 1e-46 seq40599 102 9e-17 >seq54669 Length=12211 Score = 201 bits (222), Expect = 1e-46 Identities = 315/450 (70%), Gaps = 3/450 (1%) Strand=Plus/Plus Query 135728 ACCCGCAACATC---TGGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTAC 135784 ||||| ||| || ||||||||| ||||| || | || ||| | || |||| Sbjct 11762 ACCCGGAACGTCAGATGGACTAAATAGAGTTATCTCTTCGTTTTTTACTAAACGCTGATA 11821 Query 135785 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 135844 ||| | |||||||| ||||| |||||||| | ||| |||| || |||||||| || || Sbjct 11822 CATAAATTTATTAATTTGTACCCCGTAATCCATATGGCGAACACGATTATCTTCAACACC 11881 Query 135845 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135904 || || ||||| || | |||| |||| | |||||||||||||| || || | | Sbjct 11882 ACGGTTATTTTTTAATACCAACAGATTTTCTATCTCTAAATGCCACAGGGGAAAAAATAA 11941 Query 135905 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135964 || || || || ||||| | ||| ||||| || || || || || ||||||||||| || Sbjct 11942 CGTTGCTGCACCACCACGCACACCTCCTTGAGAACAAGATTTTACCGCAGTCTGAAAGTG 12001 Query 135965 TTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTC 136024 ||| | || || ||| || |||||| | |||||||||| | || | |||| Sbjct 12002 TTTATAAAACGGAATACAACCGGTATGAAAAGCTTCACCATGACGAATTCCACTACCTTG 12061 Query 136025 CGCGCGAATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATGAT 136084 ||| || || |||||| || ||||| || || || |||| || ||| || ||||| Sbjct 12062 CGCACGGATGCGACCAGCATTAATACCAATCCCCGCGCGCTGCGAAACATATTTTATGAT 12121 Query 136085 TGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACGCACGA 136144 ||| ||||||| | ||||| | ||| ||| ||| ||| |||| || || || Sbjct 12122 TGCGCTTGCTGTGGCATTGATAGAATCCAAACTGTCCCCACATTCTATCAATACACAAGA 12181 Query 136145 ACTAAATTGTCGTGTTGGAGTACGCACACC 136174 |||||||| || || || ||||| ||||| Sbjct 12182 GCTAAATTGGCGGGTAGGCGTACGTACACC 12211 >seq40599 Length=28396 Score = 102 bits (112), Expect = 9e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 53626 GATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAG 53685 |||| ||||||||||||| || || || |||||||| ||| ||| | |||||| Sbjct 4625 GATTTTGTAAAGGTACGCGTAATCACATCTCGCTGCTGTTCTTTAGTTAATGAATTGAAA 4566 Query 53686 CGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACA 53745 || || || || ||||| || || || |||||||| || || | || |||| || | | Sbjct 4565 CGGACGGCATAGCCAGACACTCGTATCGTAAGCTGTGGATATTCTTCTGGATTATCCATA 4506 Query 53746 GCGTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACCTTCAAC 53804 || | ||| ||||| ||| | || || |||| ||| |||||||| || |||||||| Sbjct 4505 GCCTTCAGTAACATCTCTTGATTCATGACATTAAGATTTAAATGCTGTCCCCCTTCAAC 4447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524360026383600